KEGG   Juglans regia (English walnut): 109003593
Entry
109003593         CDS       T05245                                 
Name
(RefSeq) cyclin-dependent kinase D-3-like
  KO
K02202  cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
Organism
jre  Juglans regia (English walnut)
Pathway
jre03022  Basal transcription factors
jre03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109003593
  09124 Replication and repair
   03420 Nucleotide excision repair
    109003593
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:jre01001]
    109003593
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jre03021]
    109003593
   03019 Messenger RNA biogenesis [BR:jre03019]
    109003593
   03400 DNA repair and recombination proteins [BR:jre03400]
    109003593
Enzymes [BR:jre01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.22  cyclin-dependent kinase
     109003593
    2.7.11.23  [RNA-polymerase]-subunit kinase
     109003593
Protein kinases [BR:jre01001]
 Serine/threonine kinases: CMGC group
  CDK family
   109003593
Transcription machinery [BR:jre03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     109003593
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Capping factors
     109003593
DNA repair and recombination proteins [BR:jre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     109003593
SSDB
Motif
Pfam: Pkinase PK_Tyr_Ser-Thr ABC1 Haspin_kinase Kinase-like HYPK_UBA Seadorna_VP7
Other DBs
NCBI-GeneID: 109003593
NCBI-ProteinID: XP_018837342
UniProt: A0A2I4G0B8
Position
3:7304128..7311853
AA seq 407 aa
MSELDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQKVAIKKIRLGKQKEGVNFTALR
EIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMT
LKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRKFTHQVFARWYRAP
ELLFGTKQYGAGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDLV
YLPDYVEYQHVPAPPLRSLFPMASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLP
TDPDKLSRPAPKRDSRVSDFNSHDGPTVLSPPRKTRRVMPDREGLEGIFHHIDKIEANGE
NASRNEPVPMSVDFSIFGAKPPNRPTINSADRSHLKRKLDLEFQHPE
NT seq 1224 nt   +upstreamnt  +downstreamnt
atgtcagagctcgatctgtccaagaaagtcgccgatagatatctgaagcgagaagtcctc
ggagaaggtacctacggggtcgtctacaaagccattgataccaagacaggacagaaagtc
gcaattaaaaagattcggcttgggaagcaaaaggaaggggtaaattttacggcacttaga
gaaatcaagctccttaaagagcttaaagatccgaatataattgagttgattgatgcgttc
cctcataagggtaacttgcacctagtgtttgagttcatggagacagaccttgaagctgtt
attcgggaccggaatatatttctttcgccggctgacataaaatcttatcttcagatgaca
cttaaaggacttgcttactgccacaaaaaatgggttttacatagggatatgaaaccaaac
aacttgttaataggatctaatggacagctcaaacttgcagattttggtttagcacgaata
tttgggagcccagatcgcaagttcactcaccaggtttttgctcgatggtatagagcacct
gagctgttgtttggtaccaagcaatatggcgctggggtggatgtttgggctgccgcttgt
atatttgctgaacttctcctgcgtcgaccttttctgcagggttcaagtgacattgatcaa
ttgggaaagatctttgctgcatttgggacaccaacaccatcccagtggcctgatctggta
taccttcctgattatgtggagtaccagcatgttcctgcaccccctttacgttccttgttt
ccaatggctagtgatgatgctttagatctgctgtcgaagatgtttacttatgatccaaaa
gctagaatatcagtgcagcaggcattagagcaccggtacttctcatctgcaccactgcct
acagatccagataaactctccagacctgcacctaagcgggactctagggtttctgatttt
aattcacatgatggtccaaccgtcttatcacctccaagaaagacaaggagagtgatgccg
gaccgtgagggcttggaaggaatttttcatcatattgataagattgaggcaaatggtgaa
aatgcaagcaggaatgaaccagtaccaatgtcggtagacttttctatctttggagcaaaa
cctccaaacaggcccacaattaacagtgctgacagatcacatttaaaaaggaagttagat
ctggaattccagcaccccgaataa

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (30)   

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