KEGG   Juglans regia (English walnut): 109011087
Entry
109011087         CDS       T05245                                 
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
  KO
K10683  BRCA1-associated RING domain protein 1
Organism
jre  Juglans regia (English walnut)
Pathway
jre03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    109011087
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jre03019]
    109011087
   04121 Ubiquitin system [BR:jre04121]
    109011087
   03036 Chromosome and associated proteins [BR:jre03036]
    109011087
   03400 DNA repair and recombination proteins [BR:jre03400]
    109011087
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     109011087
Ubiquitin system [BR:jre04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   BRCC complex
    109011087
Chromosome and associated proteins [BR:jre03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     109011087
DNA repair and recombination proteins [BR:jre03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     109011087
SSDB
Motif
Pfam: BRCT BRCT_2 zf-HC5HC2H zf-C3HC4_2 zf-HC5HC2H_2 zf-RING_6 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 RTT107_BRCT_5
Other DBs
NCBI-GeneID: 109011087
NCBI-ProteinID: XP_018847692
UniProt: A0A2I4GUX5
Position
3:complement(11063069..11069982)
AA seq 1012 aa
MGHANDLERMGRELKCPICLSLLCSAVSLTCNHVFCNSCIVKSMKSGCACPVCKLPYRRR
EVRPAPHMDNLVSVYKSMEVASGINIFVTQNTSSTKLSDGKKQAAGDDNQGEYDTGGNSQ
DRTNKQNNLKGKAFKSNTKNTAKPSFPAKKRVQVPKRPFSETPTRLAQFEGELCEFAKEE
PRGSPTILKKSALSEKGEPMLSPFFWLREEEDVEKSTQQTDEDQLMDMPPVNVPAFSDIK
DSDDEYPPNLTPTGGLHGKFSHVADFDSEMFEWTQRPCSPELCSSPFKRQVANVEEINRI
QERELEAGLQGVTRNDDLRSENSKRQNSKQSGTGDMVLPDGATCRTEGRNNIIGGNKSNR
SGRIRKASERAQKCAKRHTDSDFGIYVDLNEASENFIQEQVSYNNESVGKTIIRGKKIGY
GTSATKPTPENAHAVSLETEILSHENVVTETSPSFGKKEGNDEGYTLKKAGKGPKKINCS
VRSGKRKLDSVKDTMLEEVPSIRKRKTEDAIPTLAPLSIPMAENKEASDYTHKPSKHAKE
NKSSDRELRSKNKLKVSDSIWKEDLVHDIRERPTCVPACKTQLNEKIQGKSDFKVQDDTS
VMPRLPSPINEVVLQKCETISYRFQCAFCLSSEESEASGEMVHYYNGRPAAADHNGGFKV
IHVHRNCTEWAPNVYFEDDIATNLEAELTRSRRIKCCCCGNKGAALGCYEKSCRKSFHVP
CAKFIPQCRWDTDNFVMLCPLHLSSKLPCESPGSQERRKKCPPKRKLSQRDCVASKHEIS
TSRNCNFCVSSKKLVLCCSALTTPDWEIVSDFERLSGVTVLKKWDSSVTHVIGSTDENRA
CKRTLKILMGILEGKWILSIEWIRACMKVLQLVDEEPYEISVDIHGIRDGPRLGRQRLLN
KQPKLFNGCKFYFMGDFTPSYKGYLQDLVVAAGGTILHRKPITEDPNTSIFQTFIIYSLE
MPDKCNPSKKATIINRRRSDADALASSTGAKLASKSWVLNSIAACNLQNLPE
NT seq 3039 nt   +upstreamnt  +downstreamnt
atgggtcatgcgaacgacctggagaggatgggcagagaactcaagtgccccatttgcttg
agtcttctgtgctctgcggtttctcttacgtgcaatcatgtattctgcaactcatgtatt
gtgaaatcaatgaaatcgggctgtgcttgtccagtttgtaaattgccatatcggcgtaga
gaggttcggcctgctcctcacatggataacctggtgagcgtttacaaaagcatggaagtt
gcttccggaatcaatatttttgtcactcaaaatacatcttcgactaaattgtcagatgga
aagaagcaagctgctggtgatgataaccagggtgaatatgatacaggtggaaattctcag
gacagaacaaataaacaaaataacttgaaaggaaaagcatttaagtccaacacaaaaaat
actgcaaaaccttcatttccagccaagaagagggttcaggtgccaaaacgccctttttca
gaaaccccaacaaggcttgcacagtttgaaggtgaattgtgtgaatttgccaaggaagaa
cctagaggtagtccaaccattttaaagaagtctgctctgagtgaaaagggagaaccgatg
ctttcacctttcttttggttgagggaggaggaagatgtagaaaagtcaactcagcaaact
gacgaggatcagctcatggatatgccacctgtaaatgttcctgccttcagtgatatcaag
gactcggatgatgaataccctcctaatttgaccccaactgggggattgcatggtaagttc
tcccatgttgcagattttgatagtgagatgtttgaatggacacaaagaccttgctctcct
gaactttgttcaagtcccttcaagagacaggttgcaaatgtggaagagatcaacaggatt
caagagagagaattagaagcaggtttacagggtgtaacaagaaatgacgacctaagatct
gaaaattcaaaacgccaaaattctaaacaaagtggtactggagatatggtcctgcccgat
ggggccacttgcagaactgaaggtcgtaataatataattgggggtaataaatctaatagg
agtggtagaatcaggaaggcaagtgaaagagcccaaaagtgtgctaagagacatacagat
tcagattttggaatttatgttgatttaaatgaagcatcagaaaattttatccaagagcaa
gtttcttacaataatgaaagtgtgggtaagactatcatacggggaaagaagattggttat
ggcaccagtgcaactaagccaactcctgaaaatgctcatgctgtctctttggaaacagaa
attctcagtcatgaaaatgtggtaactgagacatctccctcatttggtaaaaaagaaggc
aatgatgaaggctataccttgaagaaggctggaaaagggccaaagaagatcaattgctcg
gtaagatcagggaaacgaaagctggattctgtgaaggacaccatgcttgaagaagtacct
agtatacgaaaacgaaaaactgaggatgctatccccacgttagctcccttatctatacct
atggctgaaaataaggaagcctctgattacacccacaaaccgagcaaacatgcaaaagaa
aataagtcatctgatcgagaactcagaagtaagaataagttgaaagtttctgatagtatc
tggaaggaagacttggtacatgatatccgagagaggcctacttgtgttcctgcatgcaaa
acccaactcaatgaaaagattcagggcaaatctgatttcaaagttcaggatgatacatct
gtcatgccgaggcttccttctccgataaatgaagttgtcttacagaaatgtgagaccatt
agttataggtttcaatgtgctttctgtctttcttcggaagaatcagaggcatcaggagaa
atggtccactactataatggtaggcccgctgccgcagatcacaatggaggattcaaggtc
atacatgtgcacaggaattgcactgaatgggcccctaatgtctatttcgaagatgatatt
gcaacaaatcttgaagctgaattaactagaagtcggagaatcaaatgttgttgctgtgga
aataagggcgcagcacttgggtgctacgagaagagttgtcgcaaaagttttcatgtgccc
tgtgcaaagtttatccctcaatgtcgatgggatactgataactttgtcatgttatgccct
cttcatctctcctctaagttgccctgtgaaagccctggatctcaagaaaggaggaagaaa
tgtcctcctaaacggaaattatctcaacgtgattgtgttgctagtaaacatgaaatcagt
accagtaggaactgcaatttttgtgtctcttcaaagaaattggttctctgctgttcagct
ctcacaactcctgactgggagattgtttctgattttgagagattatctggagttacagtt
ttgaaaaagtgggattcaagtgtcacccatgttattggatctacagatgaaaatagggca
tgcaagagaaccctcaaaatattgatgggtatcttggagggaaagtggatacttagcatc
gaatggatcagggcctgtatgaaggtcctgcaactagtcgatgaggagccttatgaaatt
agtgtcgacattcatgggatcagggatggccctcgacttggaaggcaaagattgctgaac
aagcaaccaaagcttttcaatgggtgtaagttctatttcatgggagattttacaccttcg
tataaggggtacctacaagaccttgtagttgctgctggaggaacaattcttcatagaaaa
cctattacagaggaccccaacacctcaatatttcaaaccttcataatttacagtcttgag
atgcctgataaatgtaatcctagcaagaaagctacgattatcaaccgtcgccggtctgat
gcagatgcccttgcaagttcaactggagccaaactggcaagcaaatcatgggtgttgaac
tccatagccgcctgcaatttacaaaatcttcctgaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (49)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (75)   

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