KEGG T03039: KALB

Kutzneria albida: KALB_1606

Entry

KALB_1606         CDS       T03039

Name

(GenBank) ribonuclease, Rne/Rng family

K08300

ribonuclease E [EC:3.1.26.12]

Organism

kal Kutzneria albida

Pathway

kal03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:kal00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KALB_1606
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kal03019]
    KALB_1606
   03009 Ribosome biogenesis [BR:kal03009]
    KALB_1606
Enzymes [BR:kal01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     KALB_1606
Messenger RNA biogenesis [BR:kal03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     KALB_1606
Ribosome biogenesis [BR:kal03009]
Prokaryotic type
  rRNA processing factors
   KALB_1606

SSDB

Motif

Pfam:

RNase_E_G IF2_N S1 DnaJ_CXXCXGXG

Other DBs

NCBI-ProteinID:

AHH94978

UniProt:

W5W1B8

Position

1767038..1769776

AA seq 912 aa
MPNKRRPAGTTGGVKTTAIPSVDTTAQDHHPLLGAELPEKLRVHALAKLLGAASKDVLAV
LTDLGEAVRSPQSSVARDIAVRVAYTLSPVEQEAPAAEEAVEEEPEAPEDTPVDAEDETA
VALAPVFAPPSVVFLPPAEAAPAKSRRKPEPVVVAEQPAEPEQAEQEEDHEDLDGEDENG
TRRRRRRGRRGRGRGKGGAESDSDHDEEQGEPEAPAEQAEAPEQDASAEEEAEADGGSRR
RRRRRRRKGGEDSEAASTSDDPPNTVVHVRNSPAREEQDKDRADSAAAQSEVRSVRGSTR
LEAKRQRRRDGREAGRRRVPILSEAEFLARREAVERKMVVRERGDRTQIAVLEDGVLVEH
FVTSAGTGSLVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYAGEVDWDAAGLEGKARKI
EQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPGGGATGISRKLPDNERKRL
KDILKRVVPEDAGVIIRTASEGIAEEELGRDVQRLQAQWEVIKQKADTPKAQAPQLLYEE
PDLLVKVVRDLFTEDFSALIVQGEDAWDTIDAYVRHVAPDLAERLRKHVGTNDVFTEQRI
DEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEI
VRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRK
RVGTGLLEAFSSTCEHCRGRGVVVTAEPVHSHGGGGNNGNGNNNGNGHANGGGQSGGGRK
RNRNRHADKHEDAKHHEDVKHEDAKPEQAQPEQAQQEQAPAEQPAVRPEPVTSPEPVTST
PVAALEVGKAEVSVPYEVPEQPTLEQANGHHVAVAEPERAPEAAAKPATARRRSRRAASR
PAGPPVSAASQD

NT seq 2739 nt +upstreamnt +downstreamnt
atgccgaacaagcgacgccccgccggtacgaccggcggggtgaagaccacagccatcccc
agtgtcgacaccaccgcacaggaccaccaccccctgctcggtgccgagctcccggagaag
ctccgggtgcacgcactggccaagctgctcggtgcggccagcaaggacgtgctcgcggtg
ctcaccgacctcggtgaggccgtgcgcagcccgcagtccagcgtggccagggacatcgcc
gtgcgcgtcgcgtacacgctgagcccggtcgagcaggaggcgcccgccgccgaggaggcg
gtcgaggaggagcccgaggcccccgaggacaccccggtggacgccgaggacgagaccgcc
gtggcgctggccccggtgttcgcgccgccctcggtggtcttcctgccgcccgccgaggcc
gcgcccgccaagagcaggcgcaagccggagccggtcgtcgtggccgagcagcccgccgag
ccggagcaggccgagcaggaggaggaccacgaggacctggacggcgaggacgagaacggc
acccgccgtcgtcgtcgccggggtcgccgtggccgtggccggggcaagggcggcgccgag
agcgactcggaccacgacgaggagcagggcgagccggaggcccccgccgagcaggccgag
gcgcccgagcaggacgcgtccgccgaggaggaggccgaggcggacgggggcagccgtcgc
cgtcgtcgccgtcgccgccgcaagggcggggaggacagcgaggccgcgagcacctcggac
gacccgccgaacaccgtcgtgcacgtgcgcaactcgcccgcccgcgaggagcaggacaag
gaccgggccgactcggccgccgcgcagagcgaggtgcgcagcgtccgcggctccacccgg
ctggaggccaagcgccagcgccgcagggacggccgcgaggcgggccgccgccgcgtgccg
atcctgtccgaggccgagttcctggcccgccgcgaggccgtcgagcgcaagatggtcgtg
cgcgagcgcggggaccgcacgcagatcgccgtgctggaggacggggtgctcgtggagcac
ttcgtgacctccgcgggcaccggctcgctggtgggaaacgtctacctgggccgcgtgcag
aacgtgctgcccagcatggaggccgccttcgtcgacatcgggcgcggccgcaacgccgtg
ctctacgccggtgaggtggactgggatgccgccggtctggagggcaaggcccgcaagatc
gagcaggcgctgtccaccggggacagtgtgctggtgcaggtcaccaaggacccggtcggg
cacaagggcgcccggctgaccacccagatcagcctgcccggccgcttcctggtctacgtg
cccggtggcggggccaccggcatcagccgcaagctgccggacaacgagcgcaagcgcctc
aaggacatcctcaagcgggtcgtgcccgaggacgccggtgtgatcatccgcaccgcctcg
gagggcatcgccgaggaggagctgggccgggacgtgcagcgcctgcaggcccagtgggag
gtcatcaagcagaaggccgacacgcccaaggcccaggcgccccagctgctctacgaggag
ccggacctgctggtcaaggtcgtgcgggacctgttcaccgaggacttctccgcgctgatc
gtgcagggcgaggacgcctgggacaccatcgacgcctacgtccggcacgtggcgcccgac
ctggccgagcggctgcgcaagcacgtgggcaccaacgacgtgttcaccgagcagcgcatc
gacgagcagatcaccaaggcgctggaccgcaaggtgtggctgccctcgggcggttacctg
gtgatcgaccgcaccgaggcgatgaccgtcatcgacgtcaacaccggcaagttcaccggg
tcgggtggcaacctcgaggagacggtcacccgcaacaacctggagtcggccgaggagatc
gtgcgccagctccggctgcgcgacatcggcggcatcatcgtgatcgacttcatcgacatg
gtgctggagtccaaccgggacctggtgctgcgcaggctcaccgagtgccttggcagggac
cggacccgtcaccaggtggccgaggtgacctcgctgggcctggtgcagatgacccgcaag
cgggtcggcaccggcctgctggaggcgttcagcagcacctgtgagcactgccggggccgg
ggcgtcgtggtgaccgccgagccggtgcactcgcacggcggtggcggcaacaacggcaac
ggcaacaacaacggcaacgggcacgccaacggcggtggccagtccggcggcgggcgcaag
cgcaaccgcaaccggcacgccgacaagcacgaggacgccaagcaccacgaggacgtcaag
cacgaggacgccaagccggagcaggcccagccggaacaggctcagcaggagcaggccccg
gccgagcagcccgccgtgcggccggagccggtgaccagcccggagccggtgaccagcacg
ccggtggcggcgctggaggtcggcaaggccgaggtgtcggtgccctacgaggtgcccgag
cagcccaccctggagcaggccaacgggcaccacgtggccgtggccgagcccgagcgggcc
ccggaggccgcggccaagcccgcgaccgcccgtcgccgctcgcggcgcgctgcctcgcgg
cccgcgggcccgccggtcagcgcggccagccaggactga

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (40)   

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