KEGG T00668: Kcr

Candidatus Korarchaeum cryptofilum: Kcr_0375

Entry

Kcr_0375 CDS T00668

Definition

DNA ligase I, ATP-dependent Dnl1 (EC:6.5.1.1)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

kcr Candidatus Korarchaeum cryptofilum

Pathway

kcr03030	DNA replication
kcr03410	Base excision repair
kcr03420	Nucleotide excision repair
kcr03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:kcr03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:kcr03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:kcr03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:kcr03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 MIF4G_like_2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(384232..386016)

AA seq 594 aa
MNFIDVAKIYEKIEATTGRLEMIDYLKNLFLSTPPEILDKIVYLTLGNIAASFEGIELGV
GEKLFLRALSLATGIPQERLEEEYPKLGDIGKLAEWAVSKKAAQSFFTEDLTVERVFDTL
SKVARATGEGAQDLKVRLIAGILSDAKPLEARYIARIVTEKLRLGVRDMTVLDALSEAFL
KGRAYRDKLERKYNIYPDIGKIAKVVAEKGIKGLDEITITLGIPVRPMLAQRLRSAEEIM
EKIGPRIFAEFKYDGERMQIHVWKDGKVKIFSRRLEDITEPYPDVREYVSKAVEGHEVVL
DCETVAINPDTGEILPFQELMHRRRKYGVEEAMKTYPTVTYAFDLLYLDGRELLDEQLDD
RRKILKEILKENEKARLVQYEEIDGNVEELERFFEHAVEMGTEGLVVKDPKSIYQAGVRG
WSWIKLKRSYISKMIEPVDLVVVGAFWGKGKRAGTYGALLMAAYSPEEDVFKTVCKMGSG
FTDEELARMPKLLEDYKIDHKHPSVISNIEADVYFVPVKVAQVLGDEITLSPTHTCGWNK
VRKNAGLAIRFPRFMGWRDDKGPQDATTEEEIIEMYKEQLKVVEVEETKSEEEA

NT seq 1785 nt +upstreamnt +downstreamnt
gtgaatttcatagatgtggcgaaaatatatgagaagatagaggcaactacaggaaggcta
gagatgatagattatctgaagaaccttttcctcagcacacctccggagatattggataag
atagtctatctcaccctagggaatatagcagcctctttcgagggcatcgagctcggggtc
ggggagaagctcttcctcagggccctctccttggccaccggcatcccccaggagaggctg
gaggaggagtaccctaagctcggggatatagggaagttagctgagtgggcagtcagtaag
aaagcggctcaatcattcttcaccgaagatctcactgtggagagggtcttcgatactctg
agcaaggtagcgagagctactggggagggagcccaggacctgaaggtgaggctgatagct
gggattttgagcgatgctaagcctctggaagctaggtacatagctaggatagttacagag
aagcttaggcttggagtgagggatatgaccgtcctggatgctctatcagaggctttcctc
aaggggagggcttacagggataagctggagaggaagtacaacatatatccggatataggg
aagatagctaaggtcgtcgcggaaaaggggattaagggcttagatgaaataaccataact
ctcggaatcccggtcaggcccatgctagctcagaggctgaggtcggctgaggagataatg
gagaagatcggtcccaggatattcgcggagttcaagtacgatggggagaggatgcagatc
cacgtttggaaggatgggaaggtgaagatattctccagaaggctggaggacataaccgag
ccttatccagatgtgagggaatacgtttctaaggccgttgaggggcatgaagtggttctg
gattgcgagacagttgccataaatcccgataccggtgagatactccccttccaagagctg
atgcacaggaggaggaagtacggtgtcgaggaggcgatgaaaacctatcccaccgtgacc
tacgcattcgacctgctctacttagatggaagggagctcttagatgagcagctagatgat
aggaggaagatactgaaggagatattgaaggagaacgagaaagctaggttagtccagtat
gaggagatagatggtaatgttgaggagcttgagaggttcttcgagcatgctgttgagatg
gggaccgagggcttggtagttaaggatccgaaatcgatatatcaggctggagttagggga
tggtcctggataaagctgaagaggagttacataagcaagatgatagagcccgtcgatcta
gtagttgtaggggctttctgggggaaggggaagagagctggaacttatggagctctccta
atggcagcttactcacccgaggaggacgtcttcaagactgtatgcaagatgggatccggt
ttcacggatgaggaactcgctagaatgcctaaactgctagaagattacaagatagatcac
aagcacccgagcgtcatatccaatatagaggccgatgtttacttcgtccccgtcaaggta
gctcaggtcctgggggatgagataacgcttagtcccactcatacgtgcggatggaataaa
gtgaggaagaacgccggcctcgctataaggttccccaggttcatgggctggagggatgat
aaggggcctcaggacgcgacgactgaggaggagataatagagatgtataaggagcagctg
aaagtggttgaagttgaggaaactaagtccgaggaggaagcttga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-KCR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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