KEGG   Candidatus Kinetoplastibacterium crithidii TCC036E: CDEE_0196
Entry
CDEE_0196         CDS       T02464                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
kct  Candidatus Kinetoplastibacterium crithidii TCC036E
Pathway
kct03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:kct00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CDEE_0196
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kct03021]
    CDEE_0196
   03400 DNA repair and recombination proteins [BR:kct03400]
    CDEE_0196
Enzymes [BR:kct01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CDEE_0196
Transcription machinery [BR:kct03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CDEE_0196
DNA repair and recombination proteins [BR:kct03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CDEE_0196
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: AGF48018
UniProt: M1L5W1
Position
complement(805616..809725)
AA seq 1369 aa
MPYSYTEKKRIRKSFAKRADVQKIPCLLETQLQSYQTFLQFEVDSLKRSVHGLQAAFLSI
FPIVSHNELARLEFVSYELGKPVFDVRECQQRGLSFASPLRAKLRLVLMDRESSKHVMKE
VKEQEVYMGEIPLMTSSGSFIINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDILFFRIDRRRKMPVTILLKAIGFSPEFILSYFFDSDVFALNETG
AILEFIPDRWKGEVVSFDISDKHGVIIVEKDKRINSKHLREISKQGIKQILVKDDFLVGR
VLSANVIDPETGELVANVNDEITETVLESLRKHGIKSIKTLYINDLNRGSYISQTLRIDE
TVDQLSARIAIYRMMRPGEPPTEEAVNALLERLFFNDITYDLSRVGRMKLNSRLNRDKDS
CGSSTTLTNDDILESIKVLVDLRNGYGQVDDIDHLGNRRVRCVGELTENQFRSGLVRVER
AVRERLGQAEIDSLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMSLYARLNDYGFLETPYRK
VIDGQVTDQIDYLSAIEESKYVIAQANAELDSNNYFIDDLIACRESGETLLTSSKSIHYM
DVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLMPEKPIVGTGIERIVAVDSG
TTVQALRGGFVDYVDADRIVIKVHDSENNDGEVGVDIYNLNKYSRSNQNTNVNQRPIVKF
GDNVSKGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVSDDRYTSIHI
EELTVVARDTKLGPEEITRDISNLSEVQLNRLDDSGITYIGAEVAAGDVLVGKITPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQLFTREGVIRDNRAQSIIDYDL
HKYRQDLNDQLRIVEKDQFSRLEKVLIGKKVNGGPYGLVKDSIITKEYLDSLDKWFWFDI
RLTEDKYASLLEQVKLSLEDKRKQFDIYFEEKRKKLTQGDELPPGVMKMVKVYLAVKRRL
QPGDKMAGRHGNKGVVSRIVPVEDMPHMADGTPVDIVLNPLGVPSRMNVGQVLEVHLGWA
AKGIGQRINDLLSYEKKTEEIRSYMNKIYNCGGANVDLNQLNNKEILELAHNLKNGLTVA
TPVFDGVNEDEISQLLSLAYPDDVAEKIQLTNSRTQAWLFDGRTGDKFERPVTIGYMHYL
KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQCGGQRFGEMEVWALEAYGAAYTLQEMLTV
KSDDITGRTKVYESIVKGDHLINAGMPESFNVLVKEIRSLGLDIDLERN
NT seq 4110 nt   +upstreamnt  +downstreamnt
atgccttattcgtataccgaaaaaaagcgcattcgtaaaagctttgctaagcgtgcagat
gtacagaaaattccatgtttattggaaactcaactgcaatcttatcaaacttttttacag
tttgaggttgactctttaaagcgttcagttcatggtttgcaggccgcttttttgtcgatc
tttccaatagttagtcataatgaacttgctagattggagtttgttagttatgagcttggt
aagcctgtttttgatgtaagagaatgtcaacagcgcggtttatcatttgcttctcctttg
cgtgctaaattacgtttagtgctaatggatagggaatctagtaaacatgttatgaaagaa
gttaaagagcaggaggtctatatgggagaaattccgttaatgacttcttctggctctttc
atcatcaatggtacggagcgtgttgttgtttcgcaattacatcgctctccaggtgtcttt
ttcgagcatgataaggggaaaacccatagttctggtaaattgcttttttcagcaagaatt
attccttatagaggatcttggcttgattttgagtttgatcctaaagatattttatttttc
cgtatagaccgtcgtcgtaagatgcctgtgactattttgcttaaggcaattggtttttcg
cctgagtttatactatcttatttctttgattcagatgtatttgctttaaacgaaacaggt
gctattttagaatttattcctgataggtggaaaggtgaggttgttagttttgatatatct
gacaaacatggcgtcatcatagtagagaaagataagcgtattaattcaaagcacctcaga
gaaatatcaaaacaaggaataaaacagattctagttaaggatgatttcttagttggtagg
gttttatctgctaatgttattgatccagaaacaggagaattagttgctaatgtaaatgat
gaaattactgaaactgtattagagtcattaagaaaacatggtattaaatcaattaaaact
ttatatataaatgatttaaatagaggttcttatatttctcaaacattacgtatcgacgag
actgtggatcaactttctgcaagaattgctatttatcgtatgatgcgtcctggggaacca
ccaactgaagaggctgtaaatgctcttcttgaacgtctgttttttaacgatataacctat
gatttatctagagttggtcgtatgaaactaaatagtcgtcttaatagagataaagattct
tgcggttcttccacaacacttactaatgatgatattttagaatctataaaggttttagtt
gatttgcgtaatggttatggccaagtcgatgatattgatcatctcggaaatagaagggtg
agatgtgttggcgagttaactgaaaatcaatttagatctggtcttgttagagttgaaaga
gctgttagagagagattaggacaggctgagatagatagtttaatgccgcatgatttaata
aattcaaaaccaatttctgctgctataaaggagttttttggatctagtcaattatctcaa
tttatggatcaaactaatcctttatctgaggttacacacaagcgaagagtatctgctttg
ggacctggtggtttaactagggaacgtgctggctttgaggttagagatgtacatcctact
cattatggtcgagtctgtcctatagaaactccagagggtcctaatatagggcttataaac
tctatgtctttatatgctcgtttaaatgattatggatttttagaaacaccttatcgcaaa
gttatagatggtcaagttacagatcaaatagattatttatcagctattgaagaaagtaag
tatgttattgctcaggccaatgcagaattagatagtaataattattttattgatgatcta
atagcatgcagagagtcaggagaaacacttcttacttcttccaaaagcattcattatatg
gatgtggctccttcccaaatagtttcagttgctgcgtcattgattccatttttagagcat
gatgatgctaatagagcgttaatgggagctaatatgcagaggcaggctgttccttgtttg
atgccagaaaaaccaattgttggtactggtattgagaggatagttgccgttgattctgga
actacagttcaggcattgcgtggaggttttgttgattatgttgatgctgatcgtattgta
attaaggtccatgattctgaaaataatgatggtgaagttggagtggacatatataatttg
aataagtattcaaggtccaatcaaaatacaaatgtcaaccaaagaccaatagttaagttt
ggtgataatgtttcgaaaggagatgtactagcagatggtgcttctacagatcttggtgag
cttgcattaggtcagaatatgttggtggcttttatgccttggaatggttataactttgaa
gattctatattaatttctgaaaaggttgtttctgatgatagatacacctcaattcatatt
gaggaactaactgttgttgcgagagatactaagcttgggccagaagaaattacaagggat
attagtaatttatctgaagttcaattaaatcggttggatgattctggtattacttatatt
ggggcagaggttgcagctggcgatgtcttagttggcaagataactcctaagggagaaaca
caattaaccccagaagagaaattattaagagctatttttggagaaaaagcttctgatgtg
aaggatacttctttgcgtgttccatcaggaatgagcggaacagtaattgatgtgcagtta
tttactagggaaggagtgattcgtgataatagagctcaatctattattgattacgattta
cataaatatcgacaagatttgaatgatcagctacgtattgttgagaaagatcagttttct
agattagagaaggtattgattggtaaaaaagtaaatggaggtccttatggtttagtgaag
gattctattattactaaagaatatttagactctttagataagtggttttggtttgatatt
cgtcttacagaagataagtatgcttcgttattagaacaagtaaaattatctcttgaagat
aaaagaaagcaatttgatatttactttgaagaaaaacgtaaaaaattaacccagggagat
gaattgccacctggtgttatgaaaatggtaaaggtttatcttgctgttaagaggagatta
cagcctggtgataaaatggctggcaggcatggtaataagggtgttgtttctagaattgtt
cctgttgaggatatgcctcatatggctgatggaacgcctgttgatattgtgcttaatcct
ctaggtgttccatctagaatgaatgttggtcaagttttagaagttcatcttggttgggct
gctaaaggcattggtcaaagaatcaatgatcttttgtcatatgagaagaaaacagaagaa
attcgttcttatatgaataagatttataattgtggaggggcaaatgtggatcttaatcag
ttgaataataaagaaattctagagcttgctcataatttaaaaaatggtttgactgttgct
acccctgtttttgatggtgtaaatgaggatgaaatatctcaattattgtctttagcttat
ccagatgatgttgctgaaaaaattcagttaacgaattctagaactcaagcatggttattt
gacggccgcactggtgacaaatttgagagaccagttacaattggttatatgcattattta
aaattacaccatttagttgatgataagatgcatgctagatctactgggccttattcttta
gttactcaacagcctcttggtggtaaagcgcagtgtggtggtcaacgctttggtgagatg
gaagtatgggctttagaggcatatggtgctgcttatactcttcaggaaatgttgactgtt
aaatcagatgatataactggaagaactaaagtttatgaaagcattgttaaaggcgatcat
ttaataaatgcaggtatgccagagtcttttaatgtattagtaaaagaaattcgttctttg
ggtttggatatagatttggagcgtaactaa

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