KEGG T01484: Krodi

Krokinobacter sp. 4H-3-7-5: Krodi_1004

Entry

Krodi_1004 CDS T01484

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

kdi Krokinobacter sp. 4H-3-7-5

Pathway

kdi03410	Base excision repair
kdi03420	Nucleotide excision repair
kdi03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:kdi03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:kdi03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:kdi03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

332291647

NCBI-GeneID:

10568043

UniProt:

F4AVH1

Position

1142345..1143970

AA seq 541 aa
MKLFAALIKTLDSTNKTNEKVKALAHYFREASDKDKVWTIAILSHRRPPRPVNTTLLREW
ASELSNIPLWLFEESYHIVGDLAETIALVVPAATASSEKSLTQFLEEMISLKRKTDEEKK
EYLFDNWANLNYYERFVFTKLITGGFRIGVSQKLMTRALSQATDIEEDVLAYKLMGDWKP
QTVTFHDLVIEEDASQEFSRPYPFYLAYAVEDEPSALGDVTDFLAEHKWDGIRSQTIFRN
GEIFIWSRGEELVTDKYPELEILKEHIPDGTVIDGELLPFYDGQIGTFNDLQARIGRKTV
SKKMLKEVPVIIKAYDILEWEGKDLRETAFAKRRTILESLYRNITDKELPIGISETMEFD
SWEAMAQERDRSREMRSEGLMIKRKDSPYRVGRKKGDWWKWKVDPLTIDAVLTYAMRGHG
RRSNLFTDYTFGLWNEDKTELVTFAKAYSGLTDAEFRKVDNWIKKNTLERFGPVRSVTPH
HVFEIAFEGIALSKRHKSGIATRFPRMLRWRHDKQIEDANTLEDLKGMIPSAAKESLPPT
K

NT seq 1626 nt +upstreamnt +downstreamnt
atgaaactatttgcagcactcataaagacactcgattctacaaataagactaacgagaag
gtcaaggcgcttgcgcattacttcagagaagcgtcagataaagacaaggtgtggactatt
gccatcttatcgcaccgtcgccctccaagacccgtaaacaccaccttactcagggaatgg
gcgagcgaactatcaaacatcccgttatggctatttgaagaaagttaccacatcgtgggt
gacctcgcagaaacgattgcacttgtggttcccgcagcaacagcatcttcagagaagtcg
cttactcagtttctggaagagatgatttcgcttaagcgaaaaacggatgaagagaaaaag
gaatacctgtttgataactgggcaaatctcaactattatgaacgttttgtatttacaaaa
ttaattacaggaggctttagaataggtgtgagtcaaaagttgatgacgcgtgcattatca
caagcgacagacatagaagaagatgtgcttgcttataaattaatgggcgactggaaacca
cagacggtcacctttcacgatctggttatcgaagaagatgcaagtcaagaattttcaagg
ccgtatccgttttaccttgcctatgcagttgaagatgaaccttcggcgctgggtgatgta
acagattttcttgccgaacataagtgggatggtatacgctcacaaaccatctttcgtaat
ggggagatttttatctggagtcgcggtgaagagctagtgacagataagtacccagaactt
gagattctcaaagaacatataccagacggaaccgtcatagatggtgagttactacctttt
tatgatgggcagatcggcacatttaacgacttacaagcgcgtataggacgtaaaaccgtg
agcaagaaaatgctcaaagaagtgcctgtaattatcaaggcttatgatattctagaatgg
gaaggaaaagacttgcgtgaaaccgctttcgcgaaaagaaggactatcctcgaatcgtta
tatcgcaatatcacagataaagaactgcctataggcatttctgaaacgatggagtttgat
agttgggaagcaatggcacaagaaagagatcgtagtagagagatgcgctctgaagggtta
atgattaagcgtaaagacagcccctatcgcgtaggtagaaaaaaaggcgactggtggaaa
tggaaagttgatccactcaccattgatgcggtactcacgtatgcaatgcgtggtcacggt
agacgaagtaatttatttacagattacacctttggtttatggaatgaagataaaacagag
cttgttacttttgctaaagcatattcaggcctcacagatgccgagtttagaaaagtagac
aactggattaaaaaaaacacgttagaacgttttggtccagtgagatctgtaacgcctcat
cacgtgtttgagattgcttttgaaggtatagcgttatcaaaaagacataaaagtggtata
gccacgcgtttcccaaggatgctacgctggcgacacgataagcagatagaagatgcaaat
acactagaggatttaaaagggatgattccgagcgcagcaaaggaatctctcccgcccaca
aaataa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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