KEGG   Kocuria flava: AS188_14125
Entry
AS188_14125       CDS       T04206                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
kfv  Kocuria flava
Pathway
kfv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:kfv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AS188_14125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kfv03021]
    AS188_14125
   03400 DNA repair and recombination proteins [BR:kfv03400]
    AS188_14125
Enzymes [BR:kfv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AS188_14125
Transcription machinery [BR:kfv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AS188_14125
DNA repair and recombination proteins [BR:kfv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AS188_14125
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 DUF4407
Other DBs
NCBI-ProteinID: ALU40697
UniProt: A0A0U3HHN5
Position
complement(3153447..3157337)
AA seq 1296 aa
MSNESSLGLMRIGLATADDIRTWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRYKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDARHDDLPNLQAAVDREKAQMESTRDADIAAIARELEAD
LGRVEEEGGKAAEKRKLRDAADRQMANVRKRANQEIDRLEQVWDRFKNLKVNDLEGDEAL
YRQMVDRYGMYFEGSMGAEAIKKRLESFDLEAEAESLRETIATGKGQRKTRALKRLKVVN
AFLTTDNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGKPIALPSQDMIIGLYHLTTVREGAEGEGR
SFSSVAEAIMAHDAGQLHLNALCTIELEDFVPFEGWEAPEGWEPGTPVRVQTTLGRVLFN
DTLPEDYPWDEAVADKKHLSALVNDLAERYPMASVARTLDELKDAGFHWAARSGVTVAIS
DIATPPTKPAIMEGYEAQAAKIQGQYDRGLIDDDERRSELIDIWTKATDEVAEAMRENMS
ALNTINRMVSSGARGNWMQVRQIAGIRGLVSNPKGEIMPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREADCMTERGLTLPVADVAESGARTLHE
DIENTVHGRVLAVDVADANGEVVAEAGADLSDALIAALFEAGVDTVRVRSVLTCESAVGV
CAACYGRSLASNQLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASSDGDITQGLPRI
QELFEARTPKGVAPISEVAGRVSIEDTDKALKVVVTPDNGDEAIAYPVLRRAKLLVTEGD
HVEVGQQLVSGAVDPKEVLRIRGPRQAQKHLVDEVQGVYRSQGVGIHDKHVEVIVRQMLR
RVTIIESGDTDLLPGELVENVRFLEANRKAVAETARPAAGRPELMGITKASLATDSWLSA
ASFQETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLARYNNVDVEPTEEAKASLF
TEPGSFSDFSYADENSGQTPAEFQAIPLEDYDFGSN
NT seq 3891 nt   +upstreamnt  +downstreamnt
atgtccaacgaatcctcactcggactcatgcggatcggtcttgcgaccgcggacgacatc
cggacctggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgctacaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgtcgcgagcgcatgggccacatcgagctggccgcgccc
gtgacccacatctggtacttcaagggcgtgccctcgcgcctgggctacctgctggacctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacctcggtggac
gaggacgcccgccacgacgacctgccgaacctgcaggccgccgtggaccgggagaaggcc
cagatggagtccacccgcgacgccgacatcgcggcgatcgcccgtgagctcgaggccgac
ctcggccgcgtcgaggaggagggcggcaaggccgcggagaagcgcaagctgcgcgacgcc
gccgaccgccagatggccaacgtgcgcaagcgcgccaaccaggagatcgaccgcctcgag
caggtctgggaccgcttcaagaacctcaaggtcaacgacctcgagggcgacgaggccctg
taccggcagatggtcgaccgctacggcatgtacttcgagggctccatgggcgccgaggcg
atcaagaagcgcctcgagtccttcgacctcgaggccgaggccgagtcgctgcgcgagacg
atcgccaccggcaagggccagcgcaagacccgggccctgaagcggctgaaggtcgtcaac
gcgttcctgaccacggacaactcgccgctgggcatggtcctcgacgccgtcccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggcggccggttcgcgacctccgacctc
aacgacctctaccggcgcgtgatcaaccgcaacaaccgcctcaagcggctgctggacctc
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtggactcg
ctgttcgacaacggccggcgcggccgcccggtcaccgggccgggcaaccgtgcgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctgggcaag
cgcgtggactactcgggccgctccgtcatcgtggtgggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagcccttcgtgatgaagcggctc
gtggacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgctaccgc
ccccaggtgtgggacgtgctcgaggaggtcatcaccgagcaccccgtgctgctcaaccgt
gcgcccaccctgcaccgcctgggcatccaggccttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtgtgcggcgcgttcaacgccgacttcgacggcgaccag
atggccgtgcacctgcccctgtccccggaggcccaggccgaggcgcgcatcctgatgctc
tcctcgaacaacatcctcaagccctcggacggcaagccgatcgccctgccctcgcaggac
atgatcatcgggctctaccacctcaccaccgtccgcgagggcgccgagggggagggccgg
tcgttctcctccgtggccgaggcgatcatggcccacgacgccgggcagctgcacctcaac
gccctgtgcacgatcgagctcgaggacttcgtgccgttcgagggctgggaggcccccgag
gggtgggagcccgggacgccggtgcgcgtgcagaccaccctgggccgcgtgctgttcaac
gacacgctgcccgaggactacccgtgggacgaggccgtcgccgacaagaagcacctctcg
gcgctggtcaacgacctcgcggagcgctaccccatggcctccgtggcgcgcaccctcgac
gagctcaaggacgccggcttccactgggcggcccgctccggggtgaccgtggcgatctcg
gacatcgcgaccccgcccaccaagcccgccatcatggagggctacgaggcgcaggccgcg
aagatccagggccagtacgaccgcggtctgatcgacgacgacgagcgccgctcggagctg
atcgacatctggaccaaggccaccgacgaggtcgccgaggcgatgcgcgagaacatgtcg
gcgctgaacacgatcaaccggatggtctcctccggcgcccgcggcaactggatgcaggtg
cgccagatcgccggcatccgcgggctcgtgtccaacccgaagggcgagatcatgccccgc
ccgatcaagtcctcctaccgcgagggcctgtcggtgctggagtacttcatcgcgacccac
ggcgcccgcaagggcctggccgacaccgcgctgcgcacggcgaactcgggctacctgacc
cgtcgtctcgtggacgtctcccaggacgtcatcgtgcgcgaggcggactgcatgaccgag
cgcgggctcaccctgcccgtcgccgacgtcgcggagtccggggcgcgcaccctgcacgag
gacatcgagaacacggtgcacgggcgcgtgctggccgtggacgtcgccgacgccaacggc
gaggtcgtggccgaggccggcgcggacctctccgacgccctgatcgccgcgctgttcgag
gcgggggtcgacacggtgcgcgtgcgctcggtgctgacctgcgagtccgcggtgggcgtg
tgcgcggcgtgctacggccgctcgctggcctccaaccagctcgtggacatcggcgaggcc
gtcggcatcatcgcggcccagtcgatcggcgagcccggcacgcagctgaccatgcgcacc
ttccacaccggcggtgtcgcgtcctcggacggcgacatcacccagggtctgccgcgcatc
caggagctcttcgaggcgcgcacccccaagggtgtcgccccgatctccgaggtcgccggc
cgcgtgagcatcgaggacaccgacaaggcgctgaaggtcgtcgtcaccccggacaatggg
gacgaggcgatcgcctacccggtgctgcgccgtgcgaagctgctcgtgaccgagggcgac
cacgtcgaggtcggccagcagctggtctcgggcgccgtcgacccgaaggaggtgctgcgc
atccgcggtccgcggcaggcgcagaagcacctcgtggacgaggtccagggcgtgtaccgc
tcccagggcgtgggcatccacgacaagcacgtcgaggtcatcgtgcggcagatgctgcgg
cgcgtgacgatcatcgagtccggcgacaccgacctgctgccgggcgagctcgtcgagaac
gtccgcttcctggaggccaaccgcaaggccgtggcggagaccgcgcgccccgcggccggg
cgcccggagctgatgggcatcaccaaggcgtcgctggcgaccgactcgtggctgtccgcc
gcgtccttccaggagacgacccgcgtgctcacccaggccgccatggagggcaagtccgac
ccgctggtggggctcaaggagaacgtcatcatcggcaagctcatcccggccggcaccggg
cttgcgcggtacaacaacgtcgacgtggagccgaccgaggaggcgaaggcctcgctgttc
acggagcccgggtcgttctcggacttcagctacgccgacgagaactccgggcagaccccc
gccgagttccaggcgatcccgctggaggactacgacttcggctccaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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