KEGG   Kangiella geojedonensis: TQ33_1942
Entry
TQ33_1942         CDS       T03889                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
kge  Kangiella geojedonensis
Pathway
kge03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:kge00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TQ33_1942
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kge03021]
    TQ33_1942
   03400 DNA repair and recombination proteins [BR:kge03400]
    TQ33_1942
Enzymes [BR:kge01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TQ33_1942
Transcription machinery [BR:kge03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TQ33_1942
DNA repair and recombination proteins [BR:kge03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TQ33_1942
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AKE52876
UniProt: A0A0F6RDG2
Position
complement(2138141..2142367)
AA seq 1408 aa
MKDLLNLVKQQSQSEEFDAIRIGLASPDQIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGIICEKCGVEVTLTKVRRERMGHIDLACPVAHIWFLKSL
PSRIGMLMDMTLRDIERVLYFEAFVVTDPGMTTLETGQLLSEEGYLDALEEFGDDFEAKM
GAEAVSELLDHIDLKEEAHRIREEEIPSTNSETKLKKLSKRLKLLEAFLESGNDPQWMIM
KVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKKMALELFKPFIYSKLELRGLATTIKAAKKMVEREEPIVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTIEAQLE
SRALMMSTNNILSPANGEPIIVPTQDVVLGLYYLTRDRVNAKGEGMVFVDADEVQRAYAN
GAVDLHARVKVRLPMVHFDEEGNRTESLDLVETTVGRSLLWGIVPEGISFDLVNQAMTKK
AISRMVNTCYRERGLKATVIFADQLMYTGFSYATRSGTSVGIEDMAIPDVKAGIIESAEA
EVAEIQDQFNSGLVTQGERYNKVVDIWSHTNEKVAKAMMDHIGTDDIENSDGEVVSQPSF
NSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIEMPITANFREGLDVSQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVITTEDCGTENGLYMTPLIEGGDVVEPLRERV
LGRVVAEHVYVPGSDDILAEAGTLLDEKWVDILEQNSVDEVKVRSVITCETRNGVCAACY
GRDLARGHIINHGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASADNNVQIKNDGTLR
LKNAKTVDRKDGKQVIVSRSSELNVVDEFGRERERYKLPYGAVLAKKEGEEAKGGDIVAN
WDPHTHPIITELDGKIQFVDMVEGVNIERQTDELTGLSSIVITENKQRSGSKSSDVKPAI
KLLDAKGKELCIPGTDMPAVYFLPANAIVSLEDGSDVSIGDAIARIPQESSKTKDITGGL
PRVADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPHDNGDTYEELIPKWRQLNI
FEGEKVEKGEVVSDGADNPHDILRLKGITELARYIVNEVQEVYRLQGVGINDKHIEVVIR
QMLRKCIVTEPGDSRFLRGDQMEVIRVLEANDKLIEEGKEPIKFERVLMGITKASLATES
FISAASFQETTRVLTEAAVSGKMDDLNGLKENVIVGRLIPAGTGLTYHEERRRKRAAELQ
IEDVVGPSADDVEQALSDELSSMEDSEA
NT seq 4227 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaatttagttaagcagcagagtcagtccgaagagtttgatgcaatc
cgaattggattagcatcaccggatcaaatccgctcgtggtcttacggcgaagttaaaaag
cctgagaccattaactatcgtacctttaaaccagagcgtgacggtttattctgtgccaaa
atttttggtccagtaaaagactacgaatgtttatgtggtaaatataagcgtttgaagcac
cgcggtattatctgtgaaaagtgtggtgtagaagttactttgactaaagtacgtcgtgag
cgtatgggtcacattgacctagcatgtccagtggcgcacatctggttcttaaaatcactg
ccaagccgtattggtatgttgatggatatgacactacgcgatattgagcgtgtgttgtat
tttgaagcattcgtggttactgacccaggcatgacaactcttgagactggccagctatta
agcgaagaaggctatcttgacgcgttggaagagtttggtgatgactttgaagcgaagatg
ggtgcggaagcggtaagtgaacttcttgaccatatcgatctaaaagaagaagcgcaccgt
attcgtgaagaagaaattccatcaacgaattctgagacaaaacttaagaaattaagcaaa
cgtctaaaactactagaagctttccttgagtcgggtaacgatcctcaatggatgatcatg
aaggtattgccagttcttccaccagatttgcgtccgttagtaccgctagatggtggtcgt
ttcgcaacatcggatttgaacgatttataccgtcgtgtaattaaccgtaacaaccgttta
aagcgtttattagatcttaacgctcctgacatcatcgttcgtaacgaaaagcgtatgttg
caggagtctgttgatgcgctacttgataacggtcgtcgtggtcgtgccatcacaggctct
aacaagcgtccattgaaatctttggcagacatgatcaaaggtaagcaaggtcgtttccgt
cagaaccttcttggtaagcgtgttgactactcgggtcgttcggtgatcgttgttggtcca
acattaaaattacaccagtgtggtcttccgaagaagatggcattggagctatttaagcca
ttcatctacagcaagcttgaacttcgtggtctagcgacaacgattaaagccgctaagaaa
atggttgagcgtgaagaacctattgtttgggatatcctagaagaagtgattcgtgagcat
ccggtactattaaaccgtgcaccaacacttcaccgtttgggtatccaggcgtttgagcct
gtactgattgaaggtaaagcgattcagcttcacccattagtttgtacagcctacaacgct
gactttgatggtgaccaaatggcggtccacgttcctttaactatcgaagctcagttagag
tctcgtgcgttaatgatgtcaacaaacaacattctttcgcctgcaaacggtgagccaatt
atcgttcctactcaggacgtggtacttggtttgtactacttaacacgtgaccgtgttaat
gcgaaaggtgaaggcatggtcttcgttgatgctgacgaagtacagcgtgcttatgcaaac
ggcgctgtcgatttgcacgcaagagttaaagtacgtctaccaatggttcatttcgatgaa
gaaggtaaccgtacagagtcattagacttggtggaaacaacagtgggtcgctcacttctt
tggggcatcgttcctgaaggtattagcttcgacctagtgaaccaagcaatgacgaaaaaa
gcaatctcgcgcatggtcaacacgtgttaccgtgagcgtggccttaaagcgactgttatt
tttgctgaccaattaatgtataccggcttctcgtatgcgactcgttcaggtacttcggta
ggtatcgaagacatggcgattccagacgttaaagcaggcatcattgaatcagcagaagca
gaagttgctgagattcaagaccagtttaactctggtttagttactcagggcgagcgttat
aacaaggttgttgatatctggtcgcataccaatgaaaaagttgcgaaagcgatgatggat
catattggtacagacgatattgagaacagcgacggtgaagtcgtatcccaaccatcgttt
aactcgatctttatgatggcggactcaggcgctcgtggtagtgctgcacagattcgtcag
ctagcgggtatgcgtggtttgatggcgaaaccggatggctcgattattgaaatgccgatt
acagcgaacttccgtgaaggtctggacgtatcgcagtactttatttcgacgcacggtgcg
cgtaaaggtttggccgataccgcattgaaaacagcaaactcgggttacttaactcgtcgt
ttggtggatgttgcacaagatatggttattactaccgaagactgtggcactgaaaatggt
ctatacatgacgccgctgattgaaggtggtgacgttgtagaacctttacgtgagcgagtt
cttggtcgtgttgttgctgagcatgtttatgttcctggtagcgacgacattcttgctgaa
gcaggtacactacttgacgagaagtgggtagatatccttgagcagaactctgttgatgaa
gtaaaagttcgctcggttattacttgtgaaacccgtaacggtgtttgtgctgcgtgttat
ggtcgtgatttggctcgtggtcatattatcaaccatggtgagtctgttggtgttatcgct
gctcagtctattggtgagccgggtacacagcttacaatgcgtacgttccacattggtggt
gcggcatctcgtgcatctgcagataacaatgtacagatcaaaaacgacggtacacttcgt
ctgaaaaatgcgaaaacggttgaccgtaaagatggtaaacaagttatcgtatcgcgttca
tcagagttaaatgttgttgatgagtttggtcgtgagcgtgagcgttataagcttccttac
ggtgctgtattagcgaagaaagaaggtgaagaagcgaaaggtggcgacatcgttgctaac
tgggatccgcacacgcacccaattattaccgagctagacggtaagattcaatttgttgac
atggttgaaggtgtcaacatcgagcgtcaaacggatgaattaaccggtttaagctcaatt
gttattactgagaacaagcaacgttcaggtagtaaatcttctgacgttaaaccagcgatt
aagttgttagacgcaaaaggtaaagagttgtgtattccgggtacggatatgccagcagtt
tacttcttgccagccaacgctatcgtaagtttggaagatggttctgacgtaagtattggt
gatgcgattgctcgtattcctcaagaaagctcgaagacaaaagatattacgggtggtcta
cctcgagtagccgacctgttcgaagctcgtaaacctaaagagccagcaattcttgctgaa
atttcgggtactgtaagctttggtaaagaaactaaaggtaagcgtcgtctagtgataact
cctcatgacaacggtgatacctatgaagaattgattcctaaatggcgtcagctgaacatc
tttgaaggtgagaaagttgagaagggtgaggttgtgtctgacggtgcagataatccacac
gacattcttcgtcttaaaggaatcacagaacttgcgcgttacatcgtgaatgaagttcaa
gaagtttatcgtctccaaggtgttggaattaacgataagcacattgaagttgttattcgt
cagatgttacgtaagtgtatcgtaactgagccaggtgactctcgcttcctaagaggtgat
caaatggaagtcattagagtgcttgaagcaaacgataagttgattgaagaaggtaaagaa
ccaatcaagttcgaaagagtattgatgggtattactaaagcttcattagcaactgaatcg
tttatctcggcggcgtcattccaggaaacgactcgtgtccttaccgaagcggctgttagc
ggtaagatggatgacttgaatggcttgaaagaaaacgtgattgtgggacgtctaattcca
gcaggtactggtttgacataccacgaagagcgtcgtcgcaaacgtgctgcagaactacaa
attgaagatgttgtaggtccttcagcagatgatgttgagcaagctctttctgatgagttg
agctcaatggaagatagcgaggcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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