KEGG   Pantoea rwandensis: LH22_01150
Entry
LH22_01150        CDS       T03331                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
kln  Pantoea rwandensis
Pathway
kln03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:kln00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LH22_01150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kln03021]
    LH22_01150
   03400 DNA repair and recombination proteins [BR:kln03400]
    LH22_01150
Enzymes [BR:kln01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LH22_01150
Transcription machinery [BR:kln03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LH22_01150
DNA repair and recombination proteins [BR:kln03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LH22_01150
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AIR84138
Position
complement(258073..262296)
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNARGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEYSKNEQEEFVAKTSLIDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIVAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVSKAMMDNLQTETVINRHGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILIPRNTLIDEHWCDVIEENSVDAIKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSSGKLVIVSRNVELKMIDEFGRTKESYKVPYGAMMAKGDGEQVAAGETVANW
DPHTMPVITEVGGFIRFTDMIDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISAGDTLSRVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIASAGSTEFLEGEQAEYSRIKIANRDLEANGKIGATFMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRSVGEAPV
APQVTADEASASLAELLNAGLGGSDDE
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagacttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagatcgctctggcctcgccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccagagaccattaactaccgtaccttcaagccggagcgtgacggtcttttctgcgcccgt
atctttgggccggtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacat
cgcggcgtaatctgtgagaagtgtggcgttgaagttacacagaccaaagtgcgtcgtgag
cgcatgggccacattgaactagcttcaccgactgcgcacatttggttcctgaaatcactg
ccttcgcgtatcggcttgctgctggatatgccactgcgtgatatcgagcgcgtactgtac
ttcgaatcatatgttgtgatcgaaggcggtatgaccaacctggaaaaacgtcagattctg
accgaagagcagtaccttgacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctatccaggcgctgctgaaaaatatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgagaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgtttgttcagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggtaccgctggatggtggtcgtttc
gctacgtcggatctgaacgatctgtaccgtcgcgttatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccagatatcatcgtacgtaacgaaaagcgtatgctgcag
gaagcggtagatgccttgctggataacggccgtcgcggtcgtgccatcactggctctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactctggtcgttctgtgatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgcgaccaccatcaaagctgctaagaagatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagtgatccgcgaacatcca
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcattcgaacctgtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggcagttcacgtaccgctgacgctggaagctcagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgtgacaaagtgaatgcg
cgtggcgaaggcatggtgctgactggcccgaaagaagctgagcgtgtttatcgcgctggc
ctggccgagttgcatgctcgcgttaaagtgcgtatcaccgagtacagcaaaaacgaacaa
gaagagttcgtcgcgaaaaccagcttaatcgacaccaccattggtcgtgcgattctgtgg
atgatcgtgccgaaaggtctgccttactccatcgtcaaccaggcgctgggtaagaaagct
atctctaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgttatcttc
gctgaccagaccatgtacaccggctttgcttacgcagcccgttcaggtgcctctgtaggt
atcgacgacatggtgatcccggctaagaaagcggaaatcgtggcagaagcagaagcggaa
gttgctgagattcaggaacagttccagtctggtctggttactgctggcgaacgttacaac
aaagtcatcgatatctgggccgcagcgaacgaacgcgtttccaaggcgatgatggacaac
ctgcaaaccgaaaccgtgattaaccgtcacggcgaagaagagcagcaagtctcgttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagctcagattcgtcagctg
gccggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtcttgcggataccgcactgaaaaccgctaactccggttatctgacgcgtcgtctg
gtagacgttgcgcaggacttggtggtgaccgaagacgactgtggtactttcgaaggcatc
atgatgactccggttatcgaaggtggcgacgttaaagaaccactgcgtgagcgtgtactg
ggtcgtgtgaccgcagaagacgtgctgaagccaggtactgctgacattctgatcccgcgt
aatacgctgatcgatgagcactggtgtgatgtgatcgaagagaattcggtcgatgccatt
aaagtgcgttctgttgttggttgtgaaaccgactttggtgtgtgtgcacactgctacggt
cgcgacctggctcgtggtcacatcatcaacaaaggtgaggccatcggcgttatcgcagca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaagaacaaaggtactatcaagctg
accaacgcgaagtctgtaaccaactcctccgggaaactggttatcgtctctcgtaacgtt
gagctgaagatgatcgatgaattcggtcgtaccaaagagagctataaagtcccttacggc
gcgatgatggccaaaggtgatggcgagcaggttgccgcgggcgaaaccgtagcaaactgg
gatccgcataccatgccagttattactgaagtgggcggtttcattcgcttcactgacatg
attgatggtcagacgattactcgtcagactgatgacctgactggtctgtcatcgctggtg
gttctggattctgcagaacgtactgcgggcggtaaagatctgcgtcctgcgctgaaaatt
gttgatgccaacggaaatgatgttctgattccaggtaccgacatgccagctcagtacttc
ctgccgggcaaagcaattgtgcagctggaagatggcgttaagatcagtgctggtgacacc
ctgtctcgcgtacctcaggaatctggcggtaccaaggacatcaccggtggtctgccacgc
gttgctgacttgttcgaagcgcgtcgtccgaaagagccagccattctggccgagatcagc
ggtattatctcgttcggtaaagagaccaaaggcaagcgtcgtctggtgattacgccagtt
gatggtagcgatccgtacgaagagatgattccgaaatggcgtcagctgaacgtattcgaa
ggtgagcgtgttgaacgtggtgacgttgtttctgacggcccagaatctccacacgatatc
ctgcgtctgcgtggcgtccatgctgtgacccgttacatcactaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagtcatcgtgcgtcagatg
ctgcgtaaagcaaccatcgccagcgcgggcagcaccgagttcctggaaggtgagcaggct
gaatactctcgcatcaagatcgcgaaccgcgacctcgaagcgaacggcaaaattggcgca
acctttatgcgcgatctgctgggtatcaccaaagcttctctggcaaccgaatcgttcatc
tctgcagcatcgttccaggagaccacacgtgtcctgaccgaagcagcagttgcaggcaag
cgcgatgaactgcgcggcctgaaagagaacgtgatcgtgggtcgtttgatcccggccggt
accggttatgcttaccatcaggatcgtatgcgtcgccgttctgtaggtgaagcaccggtt
gcaccgcaggtcactgcggatgaagcctctgcgagcctggctgaactgctgaacgccggt
cttggcggtagcgacgacgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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