KEGG ORTHOLOGY: K03679

ORTHOLOGY: K03679

Entry

K03679 KO

Name

RRP4, EXOSC2

Definition

exosome complex component RRP4

Pathway

ko03018

RNA degradation

Module

M00390	Exosome, archaea
M00391	Exosome, eukaryotes

Brite

KEGG Orthology (KO) [BR:ko00001]
Genetic Information Processing
  Folding, sorting and degradation
   03018 RNA degradation
    K03679  RRP4, EXOSC2; exosome complex component RRP4
KEGG pathway modules [BR:ko00002]
Structural complex
  Genetic information processing
   RNA processing
    M00390  Exosome, archaea
     K03679  RRP4, EXOSC2; exosome complex component RRP4
    M00391  Exosome, eukaryotes
     K03679  RRP4, EXOSC2; exosome complex component RRP4

Other DBs

COG:

COG1097

Genes

HSA:	23404(EXOSC2)
PTR:	464801(EXOSC2)
PPS:	100994305(EXOSC2)
GGO:	101126796(EXOSC2)
PON:	100439017(EXOSC2)
MCC:	715960(EXOSC2)
MMU:	227715(Exosc2)
RNO:	366017(Exosc2)
CFA:	608606(EXOSC2)
AML:	100466226
FCA:	101087181(EXOSC2)
BTA:	615712(EXOSC2)
SSC:	100523112
ECB:	100069734
MDO:	100619468
SHR:	100929624(EXOSC2)
OAA:	100075716
GGA:	417182(EXOSC2)
MGP:	100550254
TGU:	100226326(EXOSC2)
ACS:	100562463
XLA:	444032(exosc2)
XTR:	595050(exosc2)
DRE:	550234(exosc2)
TRU:	101069046
OLA:	101162770
BFO:	BRAFLDRAFT_118871
CIN:	100182394
SPU:	584561
DME:	Dmel_CG3931(Rrp4)
DPO:	Dpse_GA17783
DAN:	Dana_GF11836
DER:	Dere_GG20018
DPE:	Dper_GL17601
DSE:	Dsec_GM15529
DSI:	Dsim_GD25033
DWI:	Dwil_GK22923
DYA:	Dyak_GE11554
DGR:	Dgri_GH20673
DMO:	Dmoj_GI19036
DVI:	Dvir_GJ20003
AGA:	AgaP_AGAP011211
AAG:	AaeL_AAEL012874
CQU:	CpipJ_CPIJ008052 CpipJ_CPIJ017809
NVI:	100116156(NV17540)
TCA:	657321
API:	100165683
PHU:	Phum_PHUM318750
ISC:	IscW_ISCW020383
CEL:	CELE_Y73B6BL.3(exos-2)
CBR:	CBG05449(Cbr-exos-2)
BMY:	Bm1_33895
TSP:	Tsp_06741
SMM:	Smp_064260
NVE:	NEMVE_v1g212749
HMG:	100197754
TAD:	TRIADDRAFT_21452
AQU:	100641417
ATH:	AT1G03360(RRP4)
ALY:	ARALYDRAFT_470314
GMX:	100776358
MTR:	MTR_4g121550
CSV:	101218707
RCU:	RCOM_0647870
POP:	POPTR_555071
VVI:	100244305
OSA:	4336421
DOSA:	Os04t0520000-01(Os04g0520000)
BDI:	100831931
SBI:	SORBI_06g031660(SORBIDRAFT_06g031660)
ZMA:	100216860
SMO:	SELMODRAFT_147871 SELMODRAFT_84338
PPP:	PHYPADRAFT_163408
CRE:	CHLREDRAFT_108094
VCN:	VOLCADRAFT_73556
OLU:	OSTLU_38656
OTA:	Ot05g05110
CME:	CMT376C
SCE:	YHR069C(RRP4)
AGO:	AGOS_AAL034C
ERC:	Ecym_3224
KLA:	KLLA0E12739g
LTH:	KLTH0H14696g
PPA:	PAS_chr3_0581
VPO:	Kpol_1005p15
ZRO:	ZYRO0C14410g
CGR:	CAGL0H07205g
NCS:	NCAS_0H01670(NCAS0H01670)
NDI:	NDAI_0C02000(NDAI0C02000)
TPF:	TPHA_0D02030(TPHA0D02030)
TBL:	TBLA_0A03080(TBLA0A03080)
TDL:	TDEL_0E02820(TDEL0E02820)
KAF:	KAFR_0D04660(KAFR0D04660)
DHA:	DEHA2G17248g
PIC:	PICST_31470
PGU:	PGUG_04543
LEL:	LELG_04529
CAL:	CaO19.1304(RRP4) CaO19.8884(RRP4)
CTP:	CTRG_00325
CDU:	CD36_43480
COT:	CORT_0E03700
YLI:	YALI0D05511g
CLU:	CLUG_00815
NCR:	NCU04009
SMP:	SMAC_06183
PAN:	PODANSg937
TTT:	THITE_2042530
MTM:	MYCTH_2307431
MGR:	MGG_08100
FGR:	FG09961.1
NHE:	NECHADRAFT_41004
VAL:	VDBG_00262
SSL:	SS1G_10804
BFU:	BC1G_03821
ANI:	AN3426.2
NFI:	NFIA_071370
AFM:	AFUA_3G05860
AOR:	AOR_1_98084(AO090020000055)
AFV:	AFLA_103520
ACT:	ACLA_033830
PCS:	Pc20g08110
CIM:	CIMG_02035
CPW:	CPC735_045340
PBL:	PAAG_06024
URE:	UREG_06926
ABE:	ARB_02480
TVE:	TRV_07352
AJE:	HCAG_03457
PNO:	SNOG_14630
PTE:	PTT_04382
ZTR:	MYCGRDRAFT_32207
TML:	GSTUM_00009327001
SPO:	SPAC2F7.14c
CNE:	CNA00790
CNB:	CNBA0770
CGI:	CGB_B1010C
LBC:	LACBIDRAFT_146089
CCI:	CC1G_08216
SCM:	SCHCODRAFT_43279
UMA:	UM04675.1
MGL:	MGL_0564
PGR:	PGTG_08376
ECU:	ECU10_1340
EIN:	Eint_101290
EHE:	EHEL_101360
NCE:	NCER_101358
MBR:	MONBRDRAFT_16757
NGR:	NAEGRDRAFT_50694
DDI:	DDB_G0291310
DPP:	DICPUDRAFT_76545
EHI:	EHI_163510(256.t00007)
EDI:	EDI_222260
PFA:	PFD0515w
PFD:	PFDG_02727
PFH:	PFHG_03324
PYO:	PY02309
PCB:	PC000436.03.0
PBE:	PB000735.02.0
PKN:	PKH_030440
PVX:	PVX_000730
PCY:	PCYB_031790
TAN:	TA14785
TPV:	TP02_0081
BBO:	BBOV_III010600(17.m07916)
CPV:	cgd8_2980
CHO:	Chro.80348
TGO:	TGME49_024860
TET:	TTHERM_00586540
PTM:	GSPATT00007718001
TBR:	Tb927.7.4670(Tb07.26A24.580)
TCR:	508859.109 510167.29
LMA:	LMJF_14_0010
LIF:	LINJ_14_0010
LDO:	LDBPK_140010
LMI:	LMXM_14_0010
LBZ:	LBRM_14_0010
GLA:	GL50803_33022
TVA:	TVAG_246740
PTI:	PHATRDRAFT_bd509
TPS:	THAPSDRAFT_21706
PIF:	PITG_09728
MAC:	MA1777(rrp4)
MBA:	Mbar_A2505
MMA:	MM_2622
MMAZ:	MmTuc01_2681
MBU:	Mbur_0198
MMH:	Mmah_0795
MZH:	Mzhil_1170
MPY:	Mpsy_2728
MHZ:	Metho_1884
MTP:	Mthe_1363
MCJ:	MCON_3152
MHI:	Mhar_2163
MPD:	MCP_2628
MEZ:	Mtc_0867
RCI:	RCIX2123
MTH:	MTH684
MMG:	MTBMA_c10710(rpr43)
MST:	Msp_1250
MSI:	Msm_0243
MRU:	mru_1354(rrp4)
MEW:	MSWAN_0460
MFV:	Mfer_0823
MKA:	MK0382(RRP4)
AFU:	AF0492
APO:	Arcpr_0511
AVE:	Arcve_1050
AST:	Asulf_02227
FPL:	Ferp_0301
TAC:	Ta1292
TVO:	TVN0306
PTO:	PTO0395
TAR:	TALC_00328
PHO:	PH1551
PAB:	PAB0419
PFU:	PF1569
PFI:	PFC_07075
PYN:	PNA2_0137
PYA:	PYCH_03840
PYS:	Py04_1445
TKO:	TK1635
TON:	TON_0029
TGA:	TGAM_2037(rrp4p)
TSI:	TSIB_1350
TBA:	TERMP_00162
THE:	GQS_05115
THA:	TAM4_309
THM:	CL1_0669
ABI:	Aboo_0183
ACF:	AciM339_0867
MAX:	MMALV_02990
APE:	APE_1448
SMR:	Smar_0858
SHC:	Shell_1611
IHO:	Igni_0211
DKA:	DKAM_1325
DMU:	Desmu_1316
DFD:	Desfe_1420
TAG:	Tagg_1335
IAG:	Igag_1503
THG:	TCELL_0411
HBU:	Hbut_0570
PFM:	Pyrfu_1743
SSO:	SSO0736
SOL:	Ssol_1793
STO:	ST0444
SAI:	Saci_0611
SACN:	SacN8_02970
SACR:	SacRon12I_02960
SIS:	LS215_1500
SIA:	M1425_1405
SIM:	M1627_1455
SID:	M164_1399
SIY:	YG5714_1400
SIN:	YN1551_1443
SII:	LD85_1610
SIH:	SiH_1351
SIR:	SiRe_1273
SIC:	SiL_1264
MSE:	Msed_0076
MCN:	Mcup_1981
AHO:	Ahos_0830
PAI:	PAE2208
PIS:	Pisl_0837
PCL:	Pcal_0934
PAS:	Pars_1936
PYR:	P186_0443
POG:	Pogu_0187
TNE:	Tneu_1382
CMA:	Cmaq_0366
TUZ:	TUZN_0479
TTN:	TTX_0819(rrp4)
VDI:	Vdis_0846
TPE:	Tpen_0582
ASC:	ASAC_1139
CLG:	Calag_0434
FFO:	FFONT_1337
NMR:	Nmar_0431
NIR:	NSED_02240
NKR:	NKOR_02145
CSY:	CENSYa_1537
NGA:	Ngar_c23870(ecr)
NEQ:	NEQ184
KCR:	Kcr_1371

» show all

Reference

PMID:17942686

Authors

Wang HW, Wang J, Ding F, Callahan K, Bratkowski MA, Butler JS, Nogales E, Ke A

Title

Architecture of the yeast Rrp44 exosome complex suggests routes of RNA recruitment for 3' end processing.

Journal

Proc Natl Acad Sci U S A 104:16844-9 (2007)

Reference

PMID:16939780

Authors

Schilders G, van Dijk E, Raijmakers R, Pruijn GJ

Title

Cell and molecular biology of the exosome: how to make or break an RNA.

Journal

Int Rev Cytol 251:159-208 (2006)

Reference

PMID:17471261

Authors

Hartung S, Hopfner KP

Title

The exosome, plugged.

Journal

EMBO Rep 8:456-7 (2007)

Reference

PMID:19239894

Authors

Houseley J, Tollervey D

Title

The many pathways of RNA degradation.

Journal

Cell 136:763-76 (2009)

All links

Ontology (3)   
   KEGG BRITE (2)   
   COG (1)   
Pathway (339)   
   KEGG PATHWAY (2)   
   KEGG MODULE (337)   
Gene (544)   
   KEGG GENES (288)   
   KEGG DGENES (19)   
   KEGG EGENES (172)   
   KEGG MGENES (65)   
Protein sequence (265)   
   UniProt (265)   
Literature (4)   
   PubMed (4)   
All databases (1155)   

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