KEGG ORTHOLOGY: K12620

ORTHOLOGY: K12620

Entry

K12620 KO

Name

LSM1

Definition

U6 snRNA-associated Sm-like protein LSm1

Pathway

ko03018

RNA degradation

Module

M00397

Lsm 1-7 complex

Brite

KEGG Orthology (KO) [BR:ko00001]
Genetic Information Processing
  Folding, sorting and degradation
   03018 RNA degradation
    K12620  LSM1; U6 snRNA-associated Sm-like protein LSm1
KEGG pathway modules [BR:ko00002]
Structural complex
  Genetic information processing
   Spliceosome
    M00397  Lsm 1-7 complex
     K12620  LSM1; U6 snRNA-associated Sm-like protein LSm1

Other DBs

COG:

COG1958

Genes

HSA:	27257(LSM1)
PTR:	746776(LSM1)
PPS:	100993216(LSM1)
GGO:	101149641(LSM1)
PON:	100456491(LSM1)
MCC:	699754(LSM1)
MMU:	67207(Lsm1)
RNO:	364624(Lsm1)
CFA:	475587(LSM1)
AML:	100470506
FCA:	101088074(LSM1)
BTA:	535447(LSM1)
SSC:	100627320
ECB:	100057784
MDO:	100029797
SHR:	100913641(LSM1)
GGA:	426775(LSM1)
MGP:	100550668
TGU:	100190294
ACS:	100551826
XLA:	100049754(lsm1) 735185
XTR:	496613(lsm1)
DRE:	445157(lsm1)
TRU:	101069239
OLA:	101156502
CIN:	100185388
SPU:	100889424
DME:	Dmel_CG4279(LSm1)
DPO:	Dpse_GA18077
DAN:	Dana_GF12971
DER:	Dere_GG20797
DPE:	Dper_GL10169
DSE:	Dsec_GM15742
DSI:	Dsim_GD25220
DWI:	Dwil_GK19486
DYA:	Dyak_GE13737
DGR:	Dgri_GH21171
DMO:	Dmoj_GI18766
DVI:	Dvir_GJ21790
AGA:	AgaP_AGAP001686
AAG:	AaeL_AAEL000478
CQU:	CpipJ_CPIJ010040
AME:	552260
NVI:	100113778(NV18113)
TCA:	660013
API:	100302489(Lsm1)
PHU:	Phum_PHUM516210
CEL:	CELE_F40F8.9(lsm-1)
CBR:	CBG02963(Cbr-lsm-1)
BMY:	Bm1_14415
TSP:	Tsp_07966
NVE:	NEMVE_v1g241591
HMG:	100205751
TAD:	TRIADDRAFT_58702
AQU:	100642141
ATH:	AT1G19120 AT3G14080
ALY:	ARALYDRAFT_472135 ARALYDRAFT_478821
GMX:	100306352 100812441
MTR:	MTR_2g042700 MTR_8g021250
CSV:	101207244
RCU:	RCOM_0392140 RCOM_0711050
POP:	POPTR_745826 POPTR_830650
VVI:	100249828 100250857
OSA:	4335963
DOSA:	Os04t0445800-01(Os04g0445800)
BDI:	100824555 100825845
SBI:	SORBI_06g017930(SORBIDRAFT_06g017930)
ZMA:	100280029 100280518
SMO:	SELMODRAFT_146440 SELMODRAFT_94071
PPP:	PHYPADRAFT_137954 PHYPADRAFT_162711
CRE:	CHLREDRAFT_136860(LSM1)
VCN:	VOLCADRAFT_109782
OLU:	OSTLU_39384
CME:	CMT394C
SCE:	YJL124C(LSM1)
AGO:	AGOS_AFL212C
ERC:	Ecym_5215
KLA:	KLLA0E15159g
LTH:	KLTH0F06028g
PPA:	PAS_chr3_0442
VPO:	Kpol_1031p30
ZRO:	ZYRO0D03432g
CGR:	CAGL0L05544g
NCS:	NCAS_0B07980(NCAS0B07980)
NDI:	NDAI_0B05340(NDAI0B05340)
TPF:	TPHA_0B01170(TPHA0B01170)
TBL:	TBLA_0D05620(TBLA0D05620)
TDL:	TDEL_0H01120(TDEL0H01120)
KAF:	KAFR_0G01760(KAFR0G01760)
DHA:	DEHA2B06402g
PIC:	PICST_68190
PGU:	PGUG_00777
LEL:	LELG_05343
CAL:	CaO19.7290(LSM1)
CTP:	CTRG_05957
COT:	CORT_0D01300
YLI:	YALI0A16775g
CLU:	CLUG_00092
SMP:	SMAC_02344
PAN:	PODANSg6647
TTT:	THITE_2124020
MTM:	MYCTH_57908
FGR:	FG10875.1
NHE:	NECHADRAFT_100373
VAL:	VDBG_07160
SSL:	SS1G_10500
BFU:	BC1G_15358
NFI:	NFIA_087040
AFM:	AFUA_2G11800
AOR:	AOR_1_852014
ANG:	ANI_1_528024(An02g03850)
AFV:	AFLA_134700
ACT:	ACLA_070750
PCS:	Pc20g13900
CIM:	CIMG_05431
CPW:	CPC735_065860
PBL:	PAAG_00076
ABE:	ARB_00623
TVE:	TRV_03322
AJE:	HCAG_03934
PNO:	SNOG_07370
PTE:	PTT_02318
ZTR:	MYCGRDRAFT_32304
TML:	GSTUM_00001151001
SPO:	SPBC3D6.08c(lsm1)
CNE:	CNL06350
CNB:	CNBI0490
CGI:	CGB_D0430C
LBC:	LACBIDRAFT_243025
MPR:	MPER_02947
CCI:	CC1G_06738
SCM:	SCHCODRAFT_64638
UMA:	UM02968.1
MGL:	MGL_2987
PGR:	PGTG_05053
EIN:	Eint_051370
EHE:	EHEL_051430
MBR:	MONBRDRAFT_20273
NGR:	NAEGRDRAFT_34170
DDI:	DDB_G0279837(lsm1)
DPP:	DICPUDRAFT_157882
EHI:	EHI_007960(55.t00006)
EDI:	EDI_031330
PFD:	PFDG_04164
PFH:	PFHG_04360
PCB:	PC000207.04.0
PBE:	PB000295.00.0
PKN:	PKH_092190
PCY:	PCYB_093040
TGO:	TGME49_022290
PTI:	PHATRDRAFT_50048
TPS:	THAPS_19826
PIF:	PITG_09437

» show all

Reference

PMID:19239894

Authors

Houseley J, Tollervey D

Title

The many pathways of RNA degradation.

Journal

Cell 136:763-76 (2009)

Reference

PMID:18172165

Authors

Mullen TE, Marzluff WF

Title

Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'.

Journal

Genes Dev 22:50-65 (2008)

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Ontology (3)   
   KEGG BRITE (2)   
   COG (1)   
Pathway (93)   
   KEGG PATHWAY (2)   
   KEGG MODULE (91)   
Gene (343)   
   KEGG GENES (165)   
   KEGG DGENES (21)   
   KEGG EGENES (139)   
   KEGG MGENES (18)   
Protein sequence (140)   
   UniProt (140)   
Literature (2)   
   PubMed (2)   
All databases (581)   

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