KEGG ORTHOLOGY: K12623

ORTHOLOGY: K12623

Entry

K12623 KO

Name

LSM4

Definition

U6 snRNA-associated Sm-like protein LSm4

Pathway

ko03018	RNA degradation
ko03040	Spliceosome

Module

M00354	Spliceosome, U4/U6.U5 tri-snRNP
M00396	Lsm 2-8 complex
M00397	Lsm 1-7 complex

Brite

KEGG Orthology (KO) [BR:ko00001]
Genetic Information Processing
  Transcription
   03040 Spliceosome
    K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
  Folding, sorting and degradation
   03018 RNA degradation
    K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
KEGG pathway modules [BR:ko00002]
Structural complex
  Genetic information processing
   Spliceosome
    M00354  Spliceosome, U4/U6.U5 tri-snRNP [BR:ko03041]
     K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
    M00396  Lsm 2-8 complex [BR:ko03041]
     K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
    M00397  Lsm 1-7 complex
     K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
Spliceosome [BR:ko03041]
Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4

Other DBs

COG:

COG1958

Genes

HSA:	25804(LSM4)
PPS:	100977348(LSM4)
GGO:	101127128(LSM4)
PON:	100439809(LSM4)
MCC:	720192(LSM4)
MMU:	50783(Lsm4)
RNO:	290647(Lsm4)
CFA:	609922(LSM4)
AML:	100477624
FCA:	101086377(LSM4)
BTA:	613634(LSM4)
ECB:	100070928
MDO:	100021060
SHR:	100928431(LSM4)
OAA:	100091872
GGA:	420128(LSM4)
MGP:	100549544
TGU:	100190604(LSM4)
XLA:	495318(lsm4)
XTR:	395002(lsm4)
DRE:	393669(lsm4)
TRU:	101078563
OLA:	101168448
BFO:	BRAFLDRAFT_281075
CIN:	100184512
SPU:	577829
DME:	Dmel_CG17768
DPO:	Dpse_GA22792
DAN:	Dana_GF14101
DER:	Dere_GG23936
DPE:	Dper_GL19160
DSE:	Dsec_GM11687
DSI:	Dsim_GD22262
DYA:	Dyak_GE25987
DGR:	Dgri_GH13613
DVI:	Dvir_GJ13818
AGA:	AgaP_AGAP009687
AAG:	AaeL_AAEL005355
CQU:	CpipJ_CPIJ006842
AME:	552529
TCA:	664220
API:	100159060 100167880
PHU:	Phum_PHUM137160
CEL:	CELE_F32A5.7(lsm-4)
CBR:	CBG13115(Cbr-lsm-4)
BMY:	Bm1_14590
SMM:	Smp_157680
NVE:	NEMVE_v1g228717
HMG:	100208978
TAD:	TRIADDRAFT_36877
AQU:	100633302
ATH:	AT5G27720(emb1644)
ALY:	ARALYDRAFT_326933
GMX:	100795851 100815676
MTR:	MTR_7g108700 MTR_8g058420
CSV:	101215744 101228964
RCU:	RCOM_1177550
POP:	POPTR_552428 POPTR_664457
VVI:	100241738 100242667
OSA:	4326227
DOSA:	Os01t0256900-01(Os01g0256900)
BDI:	100821596
SBI:	SORBI_03g009890(SORBIDRAFT_03g009890)
ZMA:	100285873 100384520
SMO:	SELMODRAFT_128761
PPP:	PHYPADRAFT_119225 PHYPADRAFT_121610
CRE:	CHLREDRAFT_196303(SMP6B)
VCN:	VOLCADRAFT_79613
OLU:	OSTLU_12601
CME:	CMG061C CMT545C
SCE:	YER112W(LSM4)
AGO:	AGOS_AGL296W
ERC:	Ecym_7144
KLA:	KLLA0E20813g
LTH:	KLTH0C06248g
PPA:	PAS_chr1-3_0142
VPO:	Kpol_1045p29
ZRO:	ZYRO0B03762g
CGR:	CAGL0G03465g
NCS:	NCAS_0A14510(NCAS0A14510)
NDI:	NDAI_0A01520(NDAI0A01520)
TPF:	TPHA_0K00740(TPHA0K00740)
TBL:	TBLA_0I00350(TBLA0I00350)
TDL:	TDEL_0C02700(TDEL0C02700)
KAF:	KAFR_0K01940(KAFR0K01940)
DHA:	DEHA2B05918g
PIC:	PICST_54497
PGU:	PGUG_00798
CAL:	CaJ7_s010
CTP:	CTRG_05004
CDU:	CD36_72250
COT:	CORT_0G02940
YLI:	YALI0A19756g
CLU:	CLUG_03652
NCR:	NCU07683
SMP:	SMAC_00869
TTT:	THITE_2115403
MTM:	MYCTH_2298987
MGR:	MGG_01509
FGR:	FG05320.1
NHE:	NECHADRAFT_85726
SSL:	SS1G_13239
NFI:	NFIA_087200
AFM:	AFUA_2G12020
AOR:	AOR_1_820014(AO090026000445)
ANG:	ANI_1_2458024(An02g04080)
AFV:	AFLA_134870
ACT:	ACLA_070910
PCS:	Pc20g14300
CPW:	CPC735_065700
PBL:	PAAG_00101
AJE:	HCAG_03909
PTE:	PTT_19864
ZTR:	MYCGRDRAFT_96235
SPO:	SPBC30D10.06(lsm4)
CNE:	CNC05120
CNB:	CNBC2050
CGI:	CGB_C7440C
PPL:	POSPLDRAFT_28290
CCI:	CC1G_04648
SCM:	SCHCODRAFT_57519
UMA:	UM04446.1
MGL:	MGL_3235
ECU:	ECU03_0360
EIN:	Eint_030280
EHE:	EHEL_030270
MBR:	MONBRDRAFT_4811
NGR:	NAEGRDRAFT_70010
DDI:	DDB_G0287053(lsm4)
DPP:	DICPUDRAFT_47407
EHI:	EHI_049370(21.t00001)
EDI:	EDI_326290
PFA:	PF11_0524
PFH:	PFHG_01772
PYO:	PY07662
PBE:	PB000644.03.0
PKN:	PKH_090420
PVX:	PVX_091025
PCY:	PCYB_091400
TAN:	TA04990
TPV:	TP03_0516
BBO:	BBOV_I004760(19.m02880)
TGO:	TGME49_078950
PTM:	GSPATT00004044001 GSPATT00010026001
TBR:	Tb11.01.5535
TCR:	457339.10 504643.40
LMA:	LMJF_32_0715
LIF:	LINJ_32_0750
LDO:	LDBPK_320750
LMI:	LMXM_31_0715
LBZ:	LBRM_32_0800
GLA:	GL50803_6408
PTI:	PHATRDRAFT_7848
TPS:	THAPSDRAFT_bd1124 THAPSDRAFT_bd1125
PIF:	PITG_09610

» show all

Reference

PMID:19239890

Authors

Wahl MC, Will CL, Luhrmann R

Title

The spliceosome: design principles of a dynamic RNP machine.

Journal

Cell 136:701-18 (2009)

Reference

PMID:15485930

Authors

Kufel J, Bousquet-Antonelli C, Beggs JD, Tollervey D

Title

Nuclear pre-mRNA decapping and 5' degradation in yeast require the Lsm2-8p complex.

Journal

Mol Cell Biol 24:9646-57 (2004)

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Ontology (4)   
   KEGG BRITE (3)   
   COG (1)   
Pathway (183)   
   KEGG PATHWAY (4)   
   KEGG MODULE (179)   
Gene (317)   
   KEGG GENES (167)   
   KEGG DGENES (20)   
   KEGG EGENES (124)   
   KEGG MGENES (6)   
Protein sequence (139)   
   UniProt (139)   
Literature (2)   
   PubMed (2)   
All databases (645)   

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