KEGG   ORTHOLOGY: K12623Help
Entry
K12623                      KO                                     

Name
LSM4
Definition
U6 snRNA-associated Sm-like protein LSm4
Pathway
ko03018  RNA degradation
ko03040  Spliceosome
Module
M00354  Spliceosome, U4/U6.U5 tri-snRNP
M00396  Lsm 2-8 complex
M00397  Lsm 1-7 complex
Brite
KEGG Orthology (KO) [BR:ko00001]
 Genetic Information Processing
  Transcription
   03040 Spliceosome
    K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
  Folding, sorting and degradation
   03018 RNA degradation
    K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
KEGG modules [BR:ko00002]
 Structural complex
  Genetic information processing
   Spliceosome
    M00354  Spliceosome, U4/U6.U5 tri-snRNP
     K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
    M00396  Lsm 2-8 complex
     K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
    M00397  Lsm 1-7 complex
     K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
Messenger RNA biogenesis [BR:ko03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
Spliceosome [BR:ko03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    K12623  LSM4; U6 snRNA-associated Sm-like protein LSm4
BRITE hierarchy
Other DBs
COG: COG1958
Genes
HSA: 25804(LSM4)
PTR: 747984(LSM4)
PPS: 100977348(LSM4)
GGO: 101127128(LSM4)
PON: 100439809(LSM4)
NLE: 100600323(LSM4)
MCC: 720192(LSM4)
MCF: 102115467(LSM4)
CSAB: 103234177(LSM4)
RRO: 104680616(LSM4)
RBB: 108534216(LSM4)
CJC: 100408877(LSM4)
SBQ: 101034609(LSM4)
MMU: 50783(Lsm4)
RNO: 290647(Lsm4)
CGE: 100769464(Lsm4)
NGI: 103726873(Lsm4)
HGL: 101720806(Lsm4)
CCAN: 109683691(Lsm4)
OCU: 103347114(LSM4)
CFA: 609922(LSM4)
AML: 100477624(LSM4)
UMR: 103674940(LSM4)
ORO: 101373563(LSM4)
FCA: 101086377(LSM4)
PTG: 102969185(LSM4)
AJU: 106969085(LSM4)
BTA: 613634(LSM4)
BOM: 102273335(LSM4)
BIU: 109561411(LSM4)
PHD: 102334176
CHX: 106502273(LSM4)
SSC: 110259317(LSM4)
CFR: 102510075(LSM4)
CDK: 105101874(LSM4)
BACU: 103008422(LSM4)
LVE: 103086002(LSM4)
OOR: 101279834(LSM4)
ECB: 100070928(LSM4)
EPZ: 103561546(LSM4)
EAI: 106825000(LSM4)
MYB: 102261004 102262722(LSM4)
MYD: 102751594(LSM4)
HAI: 109382482(LSM4)
RSS: 109450081(LSM4)
PALE: 102880629(LSM4)
LAV: 100671008(LSM4)
TMU: 101342777
MDO: 100021060(LSM4)
SHR: 100928431(LSM4)
OAA: 100091872(LSM4)
GGA: 420128(LSM4)
MGP: 100549544(LSM4)
CJO: 107325591(LSM4)
APLA: 106020318(LSM4)
ACYG: 106029443(LSM4)
TGU: 100190604(LSM4)
GFR: 102039794(LSM4)
FAB: 101808950(LSM4)
PHI: 102104124(LSM4)
PMAJ: 107215506(LSM4)
CCW: 104697381(LSM4)
FPG: 101915599(LSM4)
FCH: 102057255(LSM4)
EGZ: 104135645(LSM4)
AAM: 106495586(LSM4)
ASN: 102387363(LSM4)
AMJ: 102558189(LSM4)
PSS: 102464015(LSM4)
CMY: 102934077(LSM4)
CPIC: 101943314(LSM4)
PVT: 110072585(LSM4)
PBI: 103051378(LSM4)
XLA: 108712979 495318(lsm4.S)
XTR: 395002(lsm4)
NPR: 108793095(LSM4)
DRE: 393669(lsm4)
IPU: 108271207(lsm4)
AMEX: 103043545(lsm4)
TRU: 101078563(lsm4)
LCO: 104930913(lsm4)
NCC: 104958138(lsm4)
MZE: 101482859(lsm4)
OLA: 101168448(lsm4)
XMA: 102222501(lsm4)
PRET: 103463330(lsm4)
NFU: 107392831(lsm4)
CSEM: 103394678(lsm4)
HCQ: 109518980(lsm4)
BPEC: 110170504(lsm4)
SASA: 106573909(LSM4) 106613629(LSM4)
ELS: 105026207(lsm4)
SFM: 108930554(lsm4)
LCM: 102357508(LSM4)
CMK: 103182042(lsm4)
CIN: 100184512
SPU: 105446682
APLC: 110988050
DME: Dmel_CG17768(CG17768)
DSI: Dsimw501_GD22262(Dsim_GD22262)
MDE: 101890576
AAG: 5566398
AME: 552529
BIM: 100748484
BTER: 100651490
SOC: 105199619
AEC: 105151631
ACEP: 105617675
PBAR: 105428412
HST: 105189448
CFO: 105252348
LHU: 105677865
PGC: 109854417
NVI: 100678497
TCA: 664220
DPA: 109542549
NVL: 108562122
BMOR: 101745795
PMAC: 106711941
PRAP: 111001789
PXY: 105383190
DNX: 107167665
ZNE: 110839722
FCD: 110859820
CEL: CELE_F32A5.7(lsm-4)
CBR: CBG13115(Cbr-lsm-4)
BMY: Bm1_14590
TSP: Tsp_08226
CRG: 105348485
MYI: 110442182
OBI: 106876251
LAK: 106151197
SHX: MS3_03948
EPA: 110236707
ADF: 107332484
HMG: 100208978
ATH: AT5G27720(emb1644)
CPAP: 110821523
TCC: 18613544
EGR: 104426751
VAR: 108325253
CCAJ: 109791789
ADU: 107475933
AIP: 107626137
LJA: Lj0g3v0215509.1(Lj0g3v0215509.1) Lj5g3v1631030.1(Lj5g3v1631030.1)
FVE: 101304156
PPER: 18768810
PMUM: 103333918
PAVI: 110761843
MCHA: 111013478
POP: 7487777
SLY: 101255434
CANN: 107839620
BVG: 104899093
SOE: 110788605
OSA: 4326227
DOSA: Os01t0256900-01(Os01g0256900)
OBR: 102716642
BDI: 100821596
ATS: 109739341(LOC109739341)
SBI: 8073979
ZMA: 100285873
SITA: 101758941
AOF: 109827864
ATR: 18430322
CRE: CHLREDRAFT_196303(SMP6B)
APRO: F751_3055
SCE: YER112W(LSM4)
ERC: Ecym_7144
KMX: KLMA_80382(LSM4)
NCS: NCAS_0A14510(NCAS0A14510)
NDI: NDAI_0A01520(NDAI0A01520)
TPF: TPHA_0K00740(TPHA0K00740)
TBL: TBLA_0I00350(TBLA0I00350)
TDL: TDEL_0C02700(TDEL0C02700)
KAF: KAFR_0K01940(KAFR0K01940)
CAUR: QG37_03064
NCR: NCU07683
NTE: NEUTE1DRAFT116371(NEUTE1DRAFT_116371)
MGR: MGG_01509
MAW: MAC_06763
MAJ: MAA_11505
CMT: CCM_02999
ANG: ANI_1_2458024(An02g04080)
PTE: PTT_19864
SPO: SPBC30D10.06(lsm4)
CNE: CNC05120
CNB: CNBC2050
ABP: AGABI1DRAFT112946(AGABI1DRAFT_112946)
ABV: AGABI2DRAFT192916(AGABI2DRAFT_192916)
MGL: MGL_3235
DDI: DDB_G0287053(lsm4)
DFA: DFA_02782(lsm4)
EHI: EHI_049370(21.t00001)
PFA: PF11_0524
PYO: PY17X_0942400(PY07662)
TAN: TA04990
TPV: TP03_0516
BBO: BBOV_I004760(19.m02880)
SMIN: v1.2.021967.t1(symbB.v1.2.021967.t1)
SPAR: SPRG_13150
 » show all
TaxonomyKoalaUniProt
Reference
  Authors
Kufel J, Bousquet-Antonelli C, Beggs JD, Tollervey D
  Title
Nuclear pre-mRNA decapping and 5' degradation in yeast require the Lsm2-8p complex.
  Journal
Mol Cell Biol 24:9646-57 (2004)
DOI:10.1128/MCB.24.21.9646-9657.2004
  Sequence
[sce:YER112W]

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