KEGG   Kosakonia oryzae: AWR26_24095
Entry
AWR26_24095       CDS       T04433                                 
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
kor  Kosakonia oryzae
Pathway
kor03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kor00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AWR26_24095 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kor03019]
    AWR26_24095 (recQ)
   03400 DNA repair and recombination proteins [BR:kor03400]
    AWR26_24095 (recQ)
Enzymes [BR:kor01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AWR26_24095 (recQ)
Messenger RNA biogenesis [BR:kor03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AWR26_24095 (recQ)
DNA repair and recombination proteins [BR:kor03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AWR26_24095 (recQ)
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII
Other DBs
NCBI-ProteinID: ANI85077
Position
complement(5193244..5195070)
AA seq 608 aa
MAQAEVLNQESLAKQVLQETFGYQQFRPGQQDIIDTVLSGRDCLVVMPTGGGKSLCYQIP
ALVLEGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQFDVINGCRNGQIRLLY
IAPERLMLDNFLDQLRQWNPVLLAVDEAHCISQWGHDFRPEYAALGHLRQMLPSVPFMAL
TATADDTTRRDIERLLGLNDPLIQVSSFDRPNIRYMLMEKFKPLDQLLRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGFSAAAYHAGLDNELRARVQEQFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPRQYDGLQDAQKAL
SAIYRVNQRFGMGYVVEVLRGANNQRIREFGHDKLPVYGIGREQSHEHWVSVIRQLIHMG
FATQNIAQHSALQLTEAARPLLRGEVPLMLAVPRMVALKPKVMQKAAVGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPLSPGEMLSVNGVGTRKLERFGQEFMALIR
AHVDGDEE
NT seq 1827 nt   +upstreamnt  +downstreamnt
gtggcgcaggcggaagtattgaatcaggaatcgctggctaaacaggtcttgcaggagacc
ttcggctaccagcaattccgcccgggccagcaggatattatcgacaccgtgctgagcggc
cgcgactgtctggtagtgatgccgactggtggcgggaaatccctgtgctatcaaattccg
gcgctggtgctggaggggttgacggtggtggtttcgccgttgatctcactgatgaaagat
caggtcgatcagctacttgccaacggcgttgcggcggcgtgcctgaactctacccaaagc
cgtgagcagcagtttgacgtgattaacggctgtcgcaacgggcagatccgtctgctttat
atcgcgcccgagcgcctgatgctcgacaacttccttgaccagttgcgccagtggaacccg
gtgctgctggccgttgacgaagcgcactgtatttcccagtggggtcacgatttccgcccg
gaatacgccgcacttggccacctgcgccagatgctgccgtccgtgccttttatggcgctg
accgcgacggccgatgacaccacgcgccgcgatatcgaacgcctgctgggcttaaacgat
ccgctgatccaggtcagcagcttcgaccgtccgaacatccgctatatgctgatggaaaaa
tttaaaccgctcgatcagttgctgcgttacgtacaggagcagcgcggtaaatccggcatt
atttattgcaacagccgcgccaaagtggaagacaccgccgcgcgtctgcaaagccgtggg
ttcagcgcggcggcttatcatgccgggctggataacgagctgcgcgcgcgagtgcaggag
cagttccagcgcgacgacttacaaatcgtggtggcaaccgtggcgttcggcatgggcatt
aacaagcccaacgtacgtttcgtggtgcatttcgacatcccgcgtaatatcgaatcctat
tatcaggagacgggccgcgccgggcgtgacggtctgcctgcggaagcgatgctgttttac
gatccggcggatatggcgtggctgcgccgttgtctggaagagaaaccagccgggccattg
caggatattgagcggcacaagctcaatgcgatgggcgcatttgctgaagcgcaaacctgc
cgtcgtctggtgctgctcaactatttcggcgaagggcggcaggagccctgcggcaactgc
gacatttgcctcgatccgccgcgccagtacgatggtttgcaggacgcgcaaaaagcgttg
tcggccatctatcgcgtcaatcagcgtttcggtatggggtatgtagtggaagtgctgcgc
ggtgcgaacaatcagcgcatccgcgaattcggtcacgacaaattaccggtgtacggcatt
ggccgcgagcagagccatgaacactgggtgagcgtgatccgccagcttatccatatggga
ttcgccactcagaatattgctcagcattctgcgcttcagctaacggaagcggcgcgtccg
ttgctgcgcggtgaagtgccgctgatgctggcagtgccgcgaatggtggcgctgaagcca
aaagtgatgcagaaagccgccgttggcaattacgatcgcaagctgttcgccaagctgcgt
aaattgcgaaaagcgattgccgacgaagagaatatcccgccttatgtggtgtttaacgat
gcaacgctgatcgaaatggccgagcagatgccgctttcgccaggggaaatgctcagcgta
aacggcgtgggaacgcgcaaacttgagcgtttcggccaggaatttatggcgcttatccgc
gcacatgtcgacggcgacgaagagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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