KEGG   Klebsiella quasipneumoniae: AVR78_05440
Entry
AVR78_05440       CDS       T04389                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
kqu  Klebsiella quasipneumoniae
Pathway
kqu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kqu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AVR78_05440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kqu03019]
    AVR78_05440
   03400 DNA repair and recombination proteins [BR:kqu03400]
    AVR78_05440
Enzymes [BR:kqu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AVR78_05440
Messenger RNA biogenesis [BR:kqu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AVR78_05440
DNA repair and recombination proteins [BR:kqu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AVR78_05440
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII zf-CXXC
Other DBs
NCBI-ProteinID: AMR13837
UniProt: A0A164Z8P9
Position
3977150..3978976
AA seq 608 aa
MAQAEVLNQESLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVP
ALVMGGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQDVMAGCRSGQVRLLY
IAPERLMLDNFLEHLANWNLAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMAL
TATADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKPLDQLMRYVQDQRGKSGI
IYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLMDARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIREMGHDKLPVYGIGREQSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGDVPLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQSPLTAGEMLSVNGVGTRKLERFGKPFMALIR
SHVDGDDE
NT seq 1827 nt   +upstreamnt  +downstreamnt
gtggcacaggcggaagtattaaatcaggaatcgctggctaagcaggttttacaagagacc
ttcggctaccagcagttccgccctggccaggagacgattatcgagacggtgctcgagggc
cgtgactgcctggtggtcatgccgaccggtggcggcaagtcactgtgttatcaggtaccg
gcgctggtcatgggcggcctgacggtagtggtctcgccgctgatctcgctgatgaaagat
caggtcgatcagctgctggccaacggcgtggcggcggcctgtctgaactcgacccagagc
cgcgaacagcagcaggacgtgatggccggctgccgcagcgggcaggttcgtctgctgtat
atcgctccggaacggttgatgctcgacaacttccttgagcatctggcgaactggaatctg
gcgatgctggcggtggacgaagcgcactgcatctcccagtggggccatgacttccgcccg
gaatatgccgcgctgggccagcttcgtcagcggatgccgcagatcccgtttatggcgttg
accgccaccgccgatgacaccacccgccgcgatatcgtccgtctgctgggacttaacgat
ccgctcatacaggtcagcagcttcgaccggccgaacatccgctatatgctgatggagaaa
ttcaagccgctcgaccagctgatgcgctacgtccaggatcagcgcggcaaatcgggcatt
atctactgcaacagccgttcgaaagtggaagataccgccgcgcgtctgcagagccgcggc
atcagcgcggcggcttaccatgccggcctggaaaacgacgtgcgcgccgacgtgcaggag
aaattccagcgcgacgatctgcagattgtggtggcgacagtggcctttgggatgggcatc
aacaagccgaacgtccgctttgtggtgcattttgatatcccgcgcaatattgaatcctac
tatcaggagaccggccgcgccgggcgtgacggcctgccggcggaagcgatgctgttttac
gatccggcggacatggcgtggctgcgccgctgtctggaagagaagcccgccgggccgctg
caggatatcgaacggcataagctgaacgcgatgggggcgtttgctgaagcccagacctgt
cgtcgtctggtgctgctgaactactttggcgaaggacgccaggagccgtgcggcaactgc
gatatctgtcttgatccgccgaagcagtacgatggcttaatggacgcccgtaaggcgctc
tccactatttatcgggtcaaccagcgcttcgggatgggttacgtggtggaagtcctgcgt
ggcgctaacaatcagcgcatccgtgagatgggccacgataagctcccggtatacggcatc
ggccgggaacagagtcacgagcactgggtgagcgtgatccgccaactgattcaccttggg
ctggtgacgcagaatatcgcccagcactccgcgctgcagctgaccgaagccgcacgcccg
gtgctgcgcggcgacgtcccgctgcagcttgccgtaccgcgtatcgtggcgctgaagccg
aaggcgatgcagaaatccttcggcggtaattacgatcgtaagctgtttgccaagctgcgc
aaattacgtaaagcgattgccgatgaagaaaacattcccccgtacgtggtcttcaacgac
gcgacgcttattgagatggcggagcagtcgccgctaaccgccggcgaaatgctcagcgtc
aacggcgtggggacacgtaaactcgagcgtttcggcaagccgtttatggcgctgatccgg
tcgcatgtcgatggcgacgacgagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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