KEGG T00562: Krad

Kineococcus radiotolerans: Krad_0653

Entry

Krad_0653 CDS T00562

Gene name

ligC

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

kra Kineococcus radiotolerans

Pathway

kra03410	Base excision repair
kra03420	Nucleotide excision repair
kra03430	Mismatch repair
kra03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:kra03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:kra03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:kra03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:kra03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1624955..1626016

AA seq 353 aa
MGAVDLPVNPPVEPMLAKAASGLPPQPDGDPAWLYEPKWDGFRCVVFRDGEEVELSSRNG
RGLTRYFPEVVAAVRAELPERCVVDGELFVPGPGGGRLSWDLLSQRIHPAASRVELLAVE
TPAQFVAFDLLALGGEDLTGASTAVRRERLETALAGCGPTTHVTTATRDADVAARWFTTF
EGAGLDGVVAKPLDSPYLPGERVMTKVKHRRTADCVVVGYRLHKSFPGIGSMLLGLRTDE
GTAFVGGAAAFTKPRRVELLEQLSALRTGEENAEGEKNRWNAREDNSWVPVRQELVCEVE
YDQLEGLRFRHNPRFLRWRPDKTPEECRLDQLDVPADYDLADVLSGASRAGAA

NT seq 1062 nt +upstreamnt +downstreamnt
gtgggggccgtggacctgccggtgaacccgcccgtcgagccgatgctggccaaggcggcc
tccgggctgccgccgcagcccgacggcgacccggcctggctctacgagcccaagtgggac
gggttccggtgcgtggtgttccgcgacggcgaggaggtcgagctcagctcccgcaacggg
cgggggctgacgcggtacttccccgaggtcgtcgcggccgtgcgggccgagctgcccgag
cggtgcgtcgtcgacggcgagctgttcgtccccggtcccggtgggggccggctgtcgtgg
gacctgctctcccagcgcatccaccccgccgccagccgggtcgagctgctcgccgtggag
accccggcgcagttcgtcgccttcgacctgctcgccctgggcggggaggacctcaccggg
gcctcgaccgcggtgcgccgcgagcggctggagacggcgctcgccgggtgcggtcccacc
acccacgtcacgacggccacccgcgacgccgacgtcgcggcgcggtggttcaccacgttc
gagggcgccggcctcgacggggtcgtcgcgaaacccctggactccccctacctcccgggc
gaacgggtcatgacgaaggtgaagcaccgccgcaccgccgactgcgtcgtcgtggggtac
cgcctgcacaagagcttccccgggatcgggtcgatgctgctggggctgcggaccgacgag
gggaccgcgttcgtggggggcgcggcggcgttcaccaagccccgccgggtggagctgctg
gagcagctgtcggcgctgcggacgggcgaggagaacgccgagggcgagaagaaccggtgg
aacgcccgcgaggacaactcctgggtcccggttcgccaggaactggtctgcgaggtcgag
tacgaccagctggaggggctgcggttccgccacaacccgcggttcctgcgctggcggccg
gacaagacccccgaggagtgccgcctcgaccagctcgacgtccccgccgactacgacctc
gccgacgtcctgtccggggcctcgcgggcaggtgcggcgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-KRA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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