KEGG   Kosakonia radicincitans: A3780_19890
Entry
A3780_19890       CDS       T04579                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
krd  Kosakonia radicincitans
Pathway
krd03410  Base excision repair
krd03430  Mismatch repair
krd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:krd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    A3780_19890
   03430 Mismatch repair
    A3780_19890
   03440 Homologous recombination
    A3780_19890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:krd03400]
    A3780_19890
DNA repair and recombination proteins [BR:krd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     A3780_19890
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     A3780_19890
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A3780_19890
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB PEP-utilizers
Other DBs
NCBI-ProteinID: APG19708
Position
complement(4328376..4330109)
AA seq 577 aa
MKAQIQLRRRKVDDSAELAEDLPPLLRRLYASRGVRKASELERSVKGMLPWQQLTGIDEA
VSHLYHALREGLRIIVVGDFDADGATSTALSVLALRALGCENVSYLVPNRFDDGYGLSPE
VVDQAHARGAQLILTVDNGISSHAGVERAHELGIPVVVTDHHLPGDTLPDAEAIVNPNLR
DCDFPSKSLAGVGVAFYLMLALRAFLRDNGWFESRGLAMPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGRCRPGIKALLEIANRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNLGEARQLANDLDALNQTRKEIEQGMQAEALTLCEQLERSRDTLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGVLKGSGRSIQGLHMRDALERLDMLYP
GMMLKFGGHAMAAGLTLEEQRFEEFQQRFGELVTEWLDPALLQGEIVSDGPLTPQEMTLD
VAEMLREAGPWGQMFPEPLFDGEFRLLQQRLVGERHLKVMLEPVGGGPLLDGIAFNVDTT
CWPDNGVRQVNIAYKLDVNEFRGNRSVQLIIENLWPL
NT seq 1734 nt   +upstreamnt  +downstreamnt
gtgaaagctcagatacaacttcgccgccgtaaggtggatgattctgcggaactggcggaa
gacttaccgccgttactgcgtcggctctacgccagccgcggcgtgcgtaaggccagcgaa
ctggagcgcagcgtaaaaggcatgctgccctggcagcaacttaccggcattgatgaggcg
gtttcgcacctttatcacgcgctgcgcgaaggtttacgcattatcgtggtcggtgatttt
gacgccgatggcgcaaccagcacggcgctcagcgtcctggcgctgcgtgcgctgggctgt
gaaaatgtgagctacctggtgccgaatcgttttgatgacggttacggtctcagcccggaa
gtggtcgatcaggcgcatgcgcgaggcgcgcagttgatcctgacagtcgacaacggtatt
tcctcgcatgccggggtggagcgggcgcacgaactgggtattcctgtggtcgtgacggat
caccacttgcctggtgataccctgccggatgcggaagccatcgtgaaccccaacctgcgc
gactgtgatttcccgtcgaaatcgctggcgggcgtcggtgtcgctttttatctgatgctg
gcgctacgcgcttttctgcgcgacaacggctggtttgaatcgcgcgggctggctatgccg
aatcttgcggaactgctcgatcttgtcgctctgggaacagtagcagacgtggtgccgctt
gatgccaacaaccgtattctcacctggcagggcctgagccggatccgcgccgggcgctgt
cggcctggcattaaagcgctgcttgaaatcgccaaccgtgacgcgcagaaactggcggcg
agcgacctgggttttgcgctgggtccacgcctgaatgcggcgggcaggctggatgatatg
tcggtgggtgttgcgctgctgttatgcgataacctcggcgaagcacgtcagttggctaac
gatctggatgcgctgaatcagacgcgcaaagagatcgaacaagggatgcaggccgaggcg
ctaaccttgtgcgagcagcttgaacgaagccgcgataccttgcccggtgggctggcgatg
taccatcccgaatggcatcagggtgtggtggggattcttgcctcgcgaatcaaagagcgt
tttcatcggccggtgattgcctttgcgcctgctggcgatggcgttctgaaaggttccggg
cgttcgattcaggggctgcacatgcgtgatgcgctggagcgcctggatatgctctatcct
ggcatgatgcttaaattcggcggtcatgcgatggctgccggtttgacgctcgaagagcag
cgttttgaagagtttcaacagcgcttcggcgaactggtgacggaatggctggatccggcg
ctgttgcagggtgaaattgtttctgacggcccgctaacgccgcaagagatgacgctggat
gtcgccgaaatgctgcgtgaagccgggccgtgggggcaaatgttcccggagccgctgttc
gatggcgagtttcggctgttgcagcagcggctggtgggcgagcgtcacctgaaggtgatg
cttgagccggttggaggcggtccgctgcttgatggcattgcatttaacgtcgataccacc
tgctggccggataacggcgtgcggcaggtgaatattgcttataaacttgatgtcaacgag
ttccgcgggaatcgtagcgtacagcttatcatcgaaaatctctggccactttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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