KEGG   Kocuria rhizophila: KRH_17060
Entry
KRH_17060         CDS       T00701                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
krh  Kocuria rhizophila
Pathway
krh03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:krh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    KRH_17060 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:krh03400]
    KRH_17060 (mfd)
Enzymes [BR:krh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     KRH_17060 (mfd)
DNA repair and recombination proteins [BR:krh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      KRH_17060 (mfd)
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII MFD_D3 UB2H DUF3638 RecG_dom3_C
Other DBs
NCBI-ProteinID: BAG30053
NITE: KRH_17060
UniProt: B2GL97
Position
complement(1931962..1935726)
AA seq 1254 aa
MSLTGLLTALTEDRSFANIRAQAARPLAERSAETIISATDGLRAPVLAQIAAGLADDAAA
SAPAGSGTSAAEAHAPVLLAVTATGREAEELQAALGSYLPSEQIANFPSWETLPHERLSP
RSDTVGQRLSVLRRLERTDPSEQPLRVVVAPVRSVLQPVVAGLGQMEPVTLRTGQDYDFQ
QLVVELAGAAYSRVDMVTRRGEFAVRGGIIDVFPPTEDHPVRAEFFGDELDEMRWFAVAD
QRTLTTAEHPSVIVAPPCRELLITPSVQSRAAKLKEQLPGGREMLERIAGGQYVEGMESL
APLLADEMLQVMSLLPAGSMTVVLEPEKVRARAHDLVATNEEFLMAAWDSASGGSEAPLD
LNAALDTDDDAARTLSSGSFHTIAEVRDLALERSVGWWSVTGLNVNAVTTSQMDADTSDE
EVHLADTDADTLTVTAREPTRFSGDVPAVLSFLGERAREDWRIVLVTDGPGPLQRLSELL
HGADVPAARYDSVDDAPQPGLVELTTARAGRGFVIEGQRIALLTEADVLGRSSTYDNRAE
RKLPQRRKRNQVDPLALQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVL
EYAASKRNGPRDRLFVPTDQLDQVSTYVGGEAPSLSKMGGADWNKTKRSAKKAVKEIANE
LIRLYSARMASKGHSFGPDTPWQRELEQAFPYIETPDQLTTIDEVKADMERPIPMDRLIS
GDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHSETFAERFSGFPVRLATLSRFQ
TAKESKATMEGLRSGAVDVVIGTHRLLSKEMQFKNLGLVIIDEEQRFGVEHKEKLKAMRT
DVDVLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPVLTYVGPYTNKQVSAAIRRELM
REGQVFFIHNRVSTIEAQAKELAELVPEARIAVAHGQMTESRLEQIIVDFWEKKFDVLVC
TTIVETGLDIANANTLIVDHADRYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLSETAL
ERLKAVAAHNELGSGMQLAMKDLEIRGAGNLLGGEQSGHIAGVGFDMYLRLVGEAVAEYR
GDQDTGPAEMKIELPVNAHLPHDYVPGERLRLEAYRTIANAATEEAVAEAGEELTDRYGP
LPTPVENLLEVARLRIRARAAGLTDVATQGTMVRFSPAELTESRQMRLTRMYQGAQVRPV
PGTDERMVLIPKPKTARIGGKDLVDGDILAWAREVLDAIFPVLEPAGGTDDAAG
NT seq 3765 nt   +upstreamnt  +downstreamnt
atgtccctgaccggtctgctcaccgcgctcaccgaggaccgcagcttcgcgaacatccgc
gcccaagccgcgcgcccgctcgccgagcgctctgcggagacgatcatcagcgccacggac
gggctgcgcgctcctgtgctcgcgcagatcgccgcgggtctcgcggacgacgccgcggcg
tcggctcctgcgggctccggcacctccgccgcggaggcccacgccccggtgctgctcgcc
gtgacggccacgggccgcgaggccgaggagctgcaggccgcgctgggctcctacctgccg
agtgagcagatcgcgaacttcccgtcctgggagaccctgccgcacgagcggctgtccccg
cgctcggacaccgtggggcagcggctgagtgtgctgcgccggctggagcgcacggacccc
tccgagcagccgctgcgcgtggtggtggcgccggtgcgctcggtgctgcagcccgtggtc
gcggggctcgggcagatggagcccgtgacgctgcgcacggggcaggactacgacttccag
cagctcgtcgtggagctggccggtgccgcctactcgcgcgtggacatggtcacccggcgc
ggtgagttcgcggtgcgcggcgggatcatcgacgtgttcccacccaccgaggaccacccc
gtgcgcgcggagttcttcggggacgagctggacgagatgcgctggttcgcggtggcggac
cagcgcaccctgaccactgccgagcacccctcggtgatcgtggccccgccgtgccgcgag
ctgctcatcaccccgtccgtgcagtcccgggcggccaagctcaaggagcagctgccgggt
gggcgcgagatgctcgagcgcattgccggcgggcagtacgtggagggcatggagtccctc
gcgccgctgctcgcggacgagatgctgcaggtgatgtccctgctgcccgcgggctccatg
accgtggtgctcgaacccgagaaagtccgggcgcgcgcgcacgacctcgtggccaccaac
gaggagttcctcatggccgcgtgggactccgcctcgggcggcagcgaggcgcccctggac
ctcaacgcggccctggacacggacgacgacgccgcccgcaccctctcgtccgggtccttc
cacacgatcgccgaggtgcgcgatctcgccctggagcgttcggtgggctggtggtccgtg
accgggctgaacgtcaacgccgtgaccacctcccagatggatgcggacacctccgacgag
gaggtccacctcgcggacacggacgcggacaccctcaccgtgacggcgcgcgaacccacc
cggttctcgggggacgtgcccgcagtgctgtccttcctaggggagcgggcgcgcgaggac
tggcgcatcgtgctggtcacggacgggcccgggcccctgcagcggctgagcgagctgctg
cacggcgcggacgttcccgcagcccggtacgacagcgtcgacgacgccccgcagcccggt
ctcgtggagctgaccaccgcgcgcgcaggtcggggcttcgtgatcgaggggcagcggatc
gcgctgctcaccgaggcggacgtgctgggccgctccagcacctacgacaaccgcgccgag
cgcaagctcccgcagcgccgcaagcgcaaccaggtggaccccctggccctgcagaagggc
gactacgtggtgcacgagcagcacggcatcgggcagttcatcgagctcgtgcagcggccc
atcgcgggcgccatgacggctccgggtcagccgaagccggtgcgcgagtacctcgtgctg
gaatacgcagcgtccaagcgcaacgggccgagggaccggctgttcgtgcccacggaccag
ctcgaccaggtgagcacctacgtgggcggcgaggcgccgtcgctgtccaagatgggcggg
gcggactggaacaagaccaagcgcagcgccaagaaggccgtcaaggagatcgccaacgag
ctgatccggctgtactcggcgcgcatggcctccaagggccactccttcggcccggacacc
ccgtggcagcgtgagctggagcaggcgttcccgtacatcgagaccccggaccagctcacc
accatcgacgaggtcaaggcggacatggagcggcccatccccatggaccggctgatctcc
ggggacgtgggctacggcaagaccgaggtggcggtgcgcgccgcgttcaaggccgtgcag
gacggcaagcaggtggcggtgctcgtgcccaccacgctgctcgcccagcagcactccgag
acgttcgccgagcggttctcgggcttccccgtgcgcctggccacgctctcgcgcttccag
accgccaaggagtccaaggccacgatggaggggctgcgcagcggcgcggtggacgtggtg
atcggcacccaccggctgctgagcaaggagatgcagttcaagaacctgggcctcgtgatc
atcgacgaggagcagcgcttcggcgtggagcacaaggagaagctcaaggccatgcgcacg
gacgtggacgtgctggccatgtccgccacgcccatcccgcgcaccctggagatgtccatg
acgggcattcgcgagacctccacgctggccaccccgcccgaggaacgccaccccgtgctc
acgtacgtgggtccttacacgaacaagcaggtctccgcggccatccggcgcgagctcatg
cgcgagggccaggtgttcttcatccacaaccgtgtctccaccatcgaggcgcaggccaag
gagctcgcggagctcgtgcccgaggcgcggatcgcggtggcccacgggcagatgaccgag
tcccgcctggagcagatcatcgtggacttctgggagaagaagttcgacgtgctggtgtgc
accaccatcgtggagaccggtctggacatcgccaacgccaacacgctgatcgtggaccac
gcggaccgctacgggctctcccagctgcaccagctgcgcggccgtgtgggccgggggcgc
gagcgcgcctacgcgtacttcctgtacccggcggagaagccgctgagcgagaccgccctg
gaacggctcaaggccgtggccgcgcacaacgagctgggctcgggcatgcagctggccatg
aaggacctcgagatccgtggtgcgggcaacctgctgggcggtgagcagtccgggcacatc
gcgggcgtgggcttcgacatgtacctgcgcctggtgggcgaggccgtggcggagtaccgc
ggggaccaggacaccgggcctgcggagatgaagatcgagctgcccgtcaacgcgcacctg
ccgcacgactacgtgcccggggagcggctgcgcctggaggcctaccgcaccattgcgaac
gccgccacagaggaggccgtggccgaggcaggggaggagctcacggaccgctacgggccc
ctgcccaccccggtggagaacctgctggaggtcgcccggctgcggatccgggcgcgcgcc
gcgggcctcacggacgtggccacgcagggcaccatggtccgcttctcgcccgccgagctc
accgagtcccggcagatgcgcctgacccgcatgtaccagggagcgcaggtccgccccgtg
ccgggcacggacgagcgcatggtgctgatccccaagcccaagaccgcgcggatcggtggc
aaggacctcgtggacggggacatcctcgcgtgggcccgcgaggtgctcgacgcgatcttc
ccggtgctcgaacccgccggcggcacggacgacgccgcggggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (36)   

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