KEGG   Ketogulonicigenium robustum: BVG79_00836
Entry
BVG79_00836       CDS       T04841                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
kro  Ketogulonicigenium robustum
Pathway
kro03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:kro00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BVG79_00836 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kro03400]
    BVG79_00836 (mfd)
Enzymes [BR:kro01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BVG79_00836 (mfd)
DNA repair and recombination proteins [BR:kro03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BVG79_00836 (mfd)
SSDB
Motif
Pfam: TRCF DEAD Helicase_C UvrB_inter CarD_TRCF_RID MFD_D3 AAA_16 AAA_30 SecA_DEAD RecG_dom3_C
Other DBs
NCBI-ProteinID: ARO14188
UniProt: A0A1W6NY67
Position
820354..823812
AA seq 1152 aa
MSHDPKHITVSGAPEGFDARLILQEVAKSAAPVVHVARDDRRLAAMQAALAFFDPSMPVF
TFPAWDCLPYDRISPNPEISAARMATLAALIHGMPQRYVLLTTLNAATQKVPARDLLRKS
AFSVDVGARVDEGALRGFLTRMGFSPAATVTEPGDFAWRGGIVDIFPPGQDLPVRLDFFG
DVLDGARLFDPANQRTVEKLSRVELSPVSEVVLDEASITRFRQNYRVAFGAGGADDPLYE
SVTAGRKQAGMEHWLGFFHDRLETLFDFLPDATITLDDQSDAIREARWVSIVDQYEARQH
ALQQRRGSDSVYKPAPPDSLYLDESAWVTAVGGRRMLRLAPLKQPVGLGVIDAGGVIGRN
FAPERQQENINLFSALSDYIKPISKDHPVILASYSEGARERLTGLLEDEGVGEVIPVTDF
SRVGKRGVHMAVWPLEAGFTAPGLTVISEQDVLGERLIRQTRRKRRAENFLTEANSLSPG
DLVVHVEHGVGRYLGLEVITAAGAPYECLALEYAEGAKLYLPVVNIELLSRYGHEQGLLD
KLGGGAWQSKKAKLKERIRQIADRLIRVAAERALRSAPEVDPPAEIWEQFLARFPYQETD
DQLQAITDVLEDLQSGRPMDRLICGDVGFGKTEVAIRAAFVAAMSGMQVAVVAPTTLLAR
QHFKSFAERFRGFPLNVRPLSRFVSAKDAEATRKGLADGTVDVVIGTHAVLAKAVKFKSL
GLLIIDEEQHFGVQHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPIDR
LAIRTYVSEFDTITVREALLREHFRGGQSFIVVPRLSDLPEMEEFLQREVPEVKYVAAHG
QMAAGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGLSQLYQIRGRV
GRSKVRAYAYLTTKPRQKLTPAAEKRLRVLGSLDSLGAGFQLASQDLDIRGAGNLLGEEQ
SGQIREVGYELYQQMLEDEIARIKSGESEALPDNDQWAPNISIGVSVLIPEDYVPDLDVR
LGLYRRLSDLTTKVELEGFAAELIDRFGKLPREVNTLLTVVRIKAMCKRAGISSLEAGPK
GVTIRFHNDKFASPAGLVAFLHDQNGAAKVKDNRIVILADWKTEADRIRGSFAIARDLAE
KLAAEKKAAKTA
NT seq 3459 nt   +upstreamnt  +downstreamnt
atgtcccacgatccaaagcatattacagtctctggcgcgcccgaggggttcgacgcccgc
cttatcctgcaagaagtcgcgaagtccgccgcgccggtggtgcacgtcgcacgcgacgac
cgccgcttggccgcgatgcaggccgcgctggcgttttttgacccttccatgccggtgttt
acatttcctgcgtgggattgcttgccctatgaccgtatctcgcccaaccccgagatttcg
gccgcgcgcatggcgacgctggcggcgctgatacacggcatgccgcagcgctatgtgctg
ctgaccacgctgaatgcggcaacgcaaaaggtgcccgcgcgcgatttgctgcgcaagtcg
gcgttttctgtcgatgtcggcgcgcgcgtggacgagggggccttgcgcggttttctgacc
cgcatgggctttagccccgcggccaccgtgaccgagccgggcgatttcgcgtggcgcggc
ggcatcgtcgacattttcccgcccgggcaagatttgccggtgcggctggatttctttggc
gacgtgctggatggcgcgcgcctgttcgaccccgcaaaccagcgcacggttgaaaagctg
tcgcgggtcgaactgtcgccggtgtccgaggtggtgctggacgaggcttcgatcacgcgg
ttccggcagaattaccgcgtggctttcggggcgggcggggccgatgacccgctgtacgaa
agtgtcaccgcagggcgcaagcaggcggggatggagcactggctgggcttcttccacgat
aggctggaaaccctgttcgactttctacccgatgcgacgatcacgctggacgaccaaagc
gatgcgatccgcgaggcgcgctgggtctcgattgtcgaccaatacgaggcgcgacagcac
gcgctgcagcagcgccgcggcagtgacagcgtctacaaacccgcgccgccagacagccta
tatctggatgagagcgcttgggtgacggccgtgggtggccgccgtatgttgcgccttgcg
ccgctaaagcagcctgtgggccttggcgtgatcgacgcaggcggggtcataggccgcaac
tttgcgcctgagcgtcagcaggaaaatataaacctgttcagtgcattatcggactatatt
aaacctatatctaaagatcaccccgtgatccttgccagctactccgagggcgcgcgcgag
cgtttaacagggttgctggaagacgaaggcgtgggcgaggttattcccgtcaccgacttt
agccgcgttggcaagcgcggcgtgcacatggccgtctggccgctggaggctggctttacc
gcccccggcctgaccgtcatttccgaacaagacgtgctgggcgaacggctgatccgccag
acccgccgtaagcgccgcgccgaaaacttcctgaccgaggcgaacagcctgtcgcccggc
gatctggtcgtccacgtcgaacacggcgtgggccgctatctggggctagaggtgatcacc
gccgccggcgcgccctatgaatgcctcgcgctggaatatgccgaaggcgcgaagctgtac
ctgccggtggtcaatatagaactgctcagccggtatgggcacgaacagggcctgctggac
aaactgggcggcggggcatggcagtcgaaaaaggccaagctgaaagaacgaatccgccag
atcgccgaccggctgatccgcgtggccgccgaacgcgcgttgcggtccgcccccgaggtc
gacccgcccgccgagatttgggaacagttcttggcgcggttcccctatcaggagaccgac
gaccagttgcaggccatcaccgatgtgctggaggatttgcagtccggccgcccgatggac
cgcctgatctgcggcgacgtgggctttggcaagaccgaggtggcgatccgcgccgcgttc
gttgccgcgatgtcgggcatgcaggtggccgtcgttgcgcccacaacactgctggcgcgc
cagcatttcaaaagcttcgccgaacgcttccgtgggttcccgctgaatgttcgcccgttg
tcgcgcttcgtctcggccaaagatgccgaagcgacgcgtaaggggttggctgatggcacg
gttgatgtcgtcatcggcacccatgcggtgctggccaaagcggtgaaattcaaaagcctc
gggctgttgattatcgacgaggaacagcatttcggcgtgcagcataaggagcggctgaaa
cagttgcggtccgacatccacgtgctgacgctgaccgcaacgcccattccgcgcacgctg
cagctgtcgctttcgggggtgcgcgacctgtcgatcatcggcacgccgcccatcgaccgg
ctggcgatccgcacctatgtcagcgaattcgacacgatcaccgtgcgcgaggcactgctg
cgcgagcacttccgtggcggccaaagcttcatcgtcgtgccgcgcctaagcgatttaccc
gagatggaagaattcctgcagcgcgaagtgcccgaggtgaaatacgtcgccgcccatggc
cagatggctgcgggcgagttggacgaccggatgaacgccttctacgatggcaagttcgac
gtgctgctggcgacgacgattgtggaatcgggcttggacattccgaccgccaacacgatg
atcgtgcaccgcgcggatatgttcggcctgtcgcaactctatcaaattcgtgggcgggtt
ggccggtcgaaggtgcgggcctatgcctatctgacgacgaagccgcgccagaaactgacc
cctgccgcagaaaaacgcctgcgcgtgctgggcagtttggacagccttggggcagggttt
caactggcctcgcaggatttggatattcgcggcgcgggtaatctgctgggcgaggaacaa
tccggccagatccgcgaggtcggctacgagctgtaccagcagatgctggaggacgagatc
gcgcgcatcaaatcgggcgaatccgaggctctgcccgacaacgaccaatgggcgccgaac
atcagcattggcgtgtccgtactgatccccgaggattacgtgcccgatctggacgtgcgc
cttggcctgtaccgccggctatccgacctgaccaccaaagtcgagctggaaggcttcgcc
gccgagctgatcgaccgtttcggcaagctgccgcgcgaggtgaacaccctgctgacggtc
gtgcggatcaaggccatgtgtaaacgggccggaatctccagcctcgaggcggggccgaag
ggcgtcacgatccgcttccacaacgacaaattcgcgtcgcctgcggggctggtcgcgttc
ttgcacgaccaaaacggcgcggccaaggtgaaagacaatcgcattgtcattctggccgac
tggaaaaccgaagctgaccggatcaggggctctttcgcaattgcccgagatctggcagaa
aagctggccgccgagaaaaaggctgccaaaaccgcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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