KEGG   Kangiella sediminilitoris: KS2013_1993
Entry
KS2013_1993       CDS       T04467                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta''''
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ksd  Kangiella sediminilitoris
Pathway
ksd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ksd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    KS2013_1993
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ksd03021]
    KS2013_1993
   03400 DNA repair and recombination proteins [BR:ksd03400]
    KS2013_1993
Enzymes [BR:ksd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     KS2013_1993
Transcription machinery [BR:ksd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     KS2013_1993
DNA repair and recombination proteins [BR:ksd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      KS2013_1993
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AOE50702
UniProt: A0A1B3BD21
Position
complement(2137447..2141673)
AA seq 1408 aa
MKDLLNLVKQQSQSEEFDAIRIGLASPDQIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGIICEKCGVEVTLTKVRRERMGHIDLACPVAHIWFLKSL
PSRIGMLMDMTLRDIERVLYFEAFVVTDPGMTTLETGQLLSEEGYLDALEEFGDDFEAKM
GAEAVSDLLDQIDLQEEAQRIREEEIPSTNSETKIKKLSKRLKLLEAFLESGNDPQWMIM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKKMALELFKPFIYSKLELRGLATTIKAAKKMVEREEPIVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTLEAQLE
SRALMMSTNNILSPANGEPIIVPTQDVVLGLYYLTRERINAKGEGMVFADSDEVQRAYAN
GVVELQTKIKVRLPVVEFDEENNRSESMQLKDTTVGRALLWDIVPEGISFDLVNQAMTKK
AISRMVNTCYRECGLKATVIFADQLMYTGFYYSTRSGTSVGIEDMVIPDMKAGIIEAAEA
EVAQIQEQFNSGLVTQGERYNKVVDIWSHTNEKVAKAMMDHIGNDEVETKDGETVTQPSF
NSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIEMPITANFREGLDVSQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVITTDDCGTENGMYMTPLIEGGDVVEPLRERV
LGRVVAEHVYVPGTDEILAEAGTLLDEKWVEILEHNSVDEVKVRSVITCETRNGVCAACY
GRDLARGHIINHGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASADNNVQIKNDGTLR
LKNAKTVERKDGKQVIVSRSSELNVIDEFGRERERYKLPYGAVLAKNEGEEAKGGDIVAN
WDPHTHPIITELDGKIQFVDMIEGVNIERQTDELTGLSSIVITENKQRSGSKSADVKPAI
KLVDTKGKELCIPGTDMPAVYFLPTNAIVSLEDGAEVSIGDAIARIPQESSKTKDITGGL
PRVADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPQDSDDTYEELIPKWRQLNI
FEGEKVEKGEVVSDGADNPHDILRLKGITELARYIVNEVQEVYRLQGVGINDKHIEVVIR
QMLRKCIVTDAGDSRFLKGDQMEVVRVLEANDKLIEEGKEPIKFERVLMGITKASLATES
FISAASFQETTRVLTEAAVSGKVDDLNGLKENVIVGRLIPAGTGLTYHEERRRKRAAEIQ
IEDVVGPSADDVEQALSEELSSMEDNEA
NT seq 4227 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaatctagttaagcagcagagtcaatccgaagagtttgatgctatc
cgaattggattggcatcaccggatcaaatccgctcttggtcttatggcgaagtaaaaaag
ccagagacaattaactatcgtacctttaaaccggaacgtgacggtttattctgtgccaag
attttcggcccagtaaaagattacgaatgtttatgtggtaaatataagcgtttgaagcac
cgcggtattatctgtgaaaaatgtggtgttgaagtaacgcttacgaaagtacgtcgtgag
cgtatggggcacattgatctagcctgtcctgtcgcgcacatctggttcttgaaatcacta
ccaagccgaattggtatgctgatggatatgacactacgcgatattgagcgtgtgttgtat
ttcgaagcttttgttgtaactgatccaggtatgacaacccttgagactggccagctattg
agcgaagaaggctatcttgacgcgttggaagaatttggtgatgacttcgaagctaagatg
ggtgccgaagcagtcagcgatcttcttgaccagattgatttacaagaagaagctcagcga
attcgcgaagaagaaattccttcgactaattctgaaacaaagattaagaagctaagtaag
cgtcttaaattattggaagcgttcctggagtcaggtaatgatcctcagtggatgatcatg
accgtactaccggtacttccacccgatttacgtccattagtaccgctagatggtggccgt
tttgcgacttcagatctgaacgatctataccgtcgtgttattaaccgtaacaaccgtttg
aagcgcttattggatctaaatgctcctgatattatcgtacgtaacgaaaagcgtatgcta
caggagtctgttgatgcgcttcttgataatggtcgtcgtggccgtgctattacaggttct
aacaagcgtccattgaaatctttggcagacatgatcaaaggtaagcaaggccgtttccgt
cagaacttgcttggtaagcgtgttgactactcaggtcgttccgtgatcgtggtaggtcca
acattgaaactacatcagtgtggtcttccaaagaagatggcattggaattatttaaacca
tttatatacagtaagcttgagttacgtggtctagctacgactattaaagcagctaagaaa
atggttgaacgtgaagaaccaattgtttgggatatccttgaagaggttattcgtgagcac
ccagttcttctgaaccgtgcaccaacacttcaccgtcttggtattcaggcgttcgaacct
gtactaattgaaggtaaagcgattcagcttcacccactcgtttgtacagcatataacgct
gactttgatggtgaccaaatggcggtccacgttccattaacccttgaagctcagctagag
tctcgagcgttaatgatgtcaactaacaacatcctttcaccagcaaatggtgagccaatt
atcgtgcctacgcaggacgtggttcttggcctttactatttaacgcgtgagcgtatcaat
gctaagggcgaaggcatggtatttgcagactctgatgaagttcagagagcatatgctaat
ggtgttgttgagttacaaacaaaaattaaagttcgtttgcctgtggttgagtttgacgaa
gagaataaccgctctgaatcaatgcagcttaaagatacaaccgttggtcgtgctttgctt
tgggatatcgttccagaaggcattagctttgacctggttaaccaggctatgacgaaaaaa
gcaatctcacgaatggttaacacctgttaccgtgagtgtggtttgaaagcgacagttatt
tttgctgaccaattaatgtataccggtttctactactcgactcgttctggtacgtcggtt
ggtatcgaagatatggttatcccggatatgaaagcgggtattattgaagcagcagaagcc
gaagttgcacaaattcaagagcagttcaactcaggtcttgtgactcagggtgagcgttat
aataaagttgttgatatctggtcgcataccaacgaaaaagttgcaaaagcgatgatggat
cacatcggtaacgatgaggttgaaacaaaagacggtgagacagtgactcagccttcgttc
aactcaatctttatgatggccgattcaggtgctcgtggtagtgccgcacagattcgtcag
ctggctggtatgcgtggcctgatggcaaaaccggatggctcgattattgagatgccaatt
acggctaacttccgagaaggtctagacgtatctcagtactttatttcgacgcacggtgca
cgtaaaggtttggccgatacagcattgaaaactgctaactcaggttatctgactcgtcgt
ctggtagacgtagcgcaagatatggttatcacgactgatgactgcggtactgaaaacggt
atgtacatgactcctcttattgagggtggtgatgttgtagagccattgcgtgagcgagta
ttgggccgtgttgttgctgagcacgtatatgtgccaggtacagatgagattctggctgaa
gcaggaactttacttgacgagaaatgggttgagattctagagcataactctgtagatgaa
gttaaggttcgctctgtgattacctgtgaaacgcgaaatggcgtgtgtgcggcctgttat
ggtcgtgacctggctcgtggtcatattattaaccacggtgagtctgttggtgttatcgct
gcacagtcgatcggtgagccgggtacacagttaacgatgcgtacgttccacattggtggt
gctgcgtctcgtgcttctgcggacaacaatgtacagattaagaatgatggtactcttcgt
ctgaagaatgctaagactgttgagcgtaaagacggcaagcaggttatcgtatctcgttca
tctgaattgaacgttattgacgagtttggtcgtgagcgtgagcgctataagctaccttac
ggtgccgtattggctaagaatgaaggtgaagaggcgaaaggtggcgacatcgttgctaac
tgggatccacacactcacccaatcattactgagcttgacggtaagatccagttcgttgac
atgattgaaggcgttaacattgaacgtcagacagatgaacttactggcttgagctcaatt
gttattactgagaacaagcagcgttcaggcagcaaatcagctgacgttaagcctgcgatt
aaattggttgataccaaaggtaaagagctgtgtattccgggtacggatatgccagcggtt
tacttcttaccaaccaatgccatcgtaagtctggaggatggtgcagaggtaagcattggt
gatgcaattgcacgtattccgcaggaaagttctaaaacaaaagatattacgggtggtcta
ccacgagtagctgacctgtttgaagctcgtaaaccgaaagagccagcaattcttgctgaa
atttcaggtacggttagcttcggtaaagaaacaaaaggtaagcgtcgtcttgtcattact
cctcaagacagtgacgatacttacgaagagttaattcctaaatggcgtcagctgaacatc
ttcgaaggtgagaaggttgagaaaggtgaggttgtatctgacggtgcagataatccacac
gatattttacgcctgaaagggattacagagcttgcgcgttacatcgtgaatgaagttcag
gaagtttatcgtctacagggtgtaggtattaacgataagcacattgaagtggtcattcgt
cagatgttgcgtaagtgtattgttactgatgcaggtgactctcgcttcctaaaaggtgat
caaatggaagttgttagagtacttgaagcaaacgataagttgattgaagaaggtaaagag
ccaatcaagttcgaacgtgtcttgatgggtattaccaaagcgtctttagcaacagaatcg
tttatctcagcggcgtcattccaggaaacgactcgagtacttaccgaagcggctgtgagc
ggtaaggttgatgacttgaatggcttgaaagagaacgtaattgtgggtcgtttgatcccg
gcaggtacgggtttgacataccatgaagagcgtcgtcgcaaacgtgctgcggaaatacaa
attgaagatgttgtaggtccatcagcagatgatgttgagcaagctctttctgaagagttg
agctcaatggaagataacgaggcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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