KEGG T00974: Ksed

Kytococcus sedentarius: Ksed_19790

Entry

Ksed_19790 CDS T00974

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

kse Kytococcus sedentarius

Pathway

kse03410	Base excision repair
kse03420	Nucleotide excision repair
kse03430	Mismatch repair
kse03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:kse03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:kse03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:kse03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:kse03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S

Other DBs

NCBI-GI:

256825782

NCBI-GeneID:

8373483

UniProt:

C7NKD9

Position

complement(2062906..2065542)

AA seq 878 aa
MARSERRTVRVGERTLSVSSLDKVLYPEAGTTKADVVHYYLSVAEVLLPQLAGRPVTRKR
WVDGVGTEGDPGEVFFRKDLEDSAPDWIPTGRIVHANRANSYPLATEAAVLAWFAQVAAL
ELHTPQWRFGPDGQPRRPDRLVLDLDPGEGVGLTECAQVARWCREVLDGMALEAFPVTSG
SKGIHLYAALDGTHDAEAVSAVAHELARALEADHPDLVVSTMKRARRAGKVFLDWSQNNA
SKTTVAPYSLRGRARPTVAAPRTWEELDDPGLAQLELDEVLDRVADGIDPVASLGAGTGP
GGAGEVSSPAPDRLRTYRSMRDPDRTAEPVPADPPREREAPDGELPSFVIQEHHASSLHW
DFRLEHSGVLVSWAVPKGPPLEHDTNRLAVMTEDHPLEYGTFEGTIAAGEYGAGEVTIWD
AGTYERKKWREGKEVIAVLHGRPDGGLGGVPRRFALIQATGMGSERNWLLRLTDEQPGAG
HPQDGSPEEVTAAPSPSRSRADRSDSRTARRALRRRPAPGFTVADLPAAMAATAGTPEQV
ERAVAGGQEWAFEMKWDGYRVVAGVRTAGQGPADADADADAGAEREGAVVLASRNGKDLT
DTFPAAVELTRLLRGEAAERGGAVLDGELVALDDRGRPDFGLLQAALGDGPGVNAAGDPI
ELRYLVFDLLQLGAPGDPEDRQRSLLRIPWGERRELLREVLGTGGDAVSVPPAHTGTLAQ
AQRASRGLGLEGVVAKRVDAVYLPGQRGSAWVKLKTQRHQEVVVIGVRQGRGGRSGGIGS
LLVAVGDDEGELRYAGRVGTGFSAAQLADIEKTLRRIERKTPPVDDVPAADRTDAWWVTP
RLVGEVSLAGRTRDQRVRQAVWRGWRPDKEAGEVRWEV

NT seq 2637 nt +upstreamnt +downstreamnt
atggcccgcagcgagcgcaggaccgtccgcgtgggcgagcgcaccctctcggtctccagc
ctggacaaggtgctctaccccgaggcgggcaccaccaaggccgacgtcgtgcactactac
ctgtcggtggccgaggtcctgctgccgcagctggcgggccgtccggtgacgcgcaagcgc
tgggtcgacggggtaggcacggagggcgacccgggggaggtgttcttccgcaaggacctg
gaggactcggcgccggactggatccccaccgggcggatcgtgcacgccaaccgggcgaac
tcctacccgctggccaccgaggcggcggtgttggcctggttcgcccaggtggcggcactg
gagctgcacaccccgcagtggcgcttcgggcccgacgggcagccccgccgccccgaccgg
ctggtgctggacctcgaccccggcgagggggtggggctgaccgagtgcgcccaggtggcg
cggtggtgccgcgaggtgctcgacggcatggcgctggaggccttccccgtgacctcgggg
tcgaagggcatccacctgtacgccgcgctcgacgggacgcacgatgccgaggcggtctcg
gcggtcgcccacgagctcgcgcgggccttggaggccgaccacccggacctcgtcgtctcc
accatgaagcgtgcccgccgggccgggaaggtgttcctggactggagccagaacaacgcc
tccaagaccaccgtggctccgtactcgttgcgcggccgcgcccggccgacggtggccgcc
ccccgtacgtgggaggagctcgacgacccgggcctcgcgcagctcgagctcgatgaggtg
ctcgaccgggtcgcggacggcatcgaccccgtcgcgagcctgggggcgggcacggggccc
gggggtgctggcgaggtgtcgtcgccggcgcccgaccggctgaggacctaccgctcgatg
cgggaccccgaccggaccgccgagccggtgccggccgacccgccgcgggagcgcgaggcg
ccggacggggagctgccgagcttcgtgatccaggagcaccacgccagcagcctgcactgg
gacttccggctggagcactccggcgtgctggtctcctgggccgtgcccaaggggccgccg
ctggagcacgacaccaaccggctggcggtcatgaccgaggaccacccgctggagtacggc
acgttcgagggcaccatcgccgcgggggagtacggcgccggcgaggtgaccatctgggac
gcgggcacctacgagcgcaagaagtggcgggagggcaaggaggtgatcgccgtcctgcac
ggccgccccgatggggggctcggcggggtgccacgccggttcgccctcatccaggccacc
ggcatgggcagcgagcgcaactggctgctgcgcctcaccgacgagcagcccggggcgggg
catccccaagacggttcccccgaggaggtgacggcggcaccgtcaccgagccggtcccgt
gctgaccggtcggactcgcgcaccgccagaagggccttgcgccggcggcccgcgccgggg
ttcaccgtggccgacctgccggcggcgatggcggccacggccgggaccccggagcaggtg
gagcgggcggtggccggcggccaggagtgggcgttcgagatgaagtgggacggctatcgc
gtggtcgcgggggtccggacggcggggcagggtcctgccgatgccgatgccgatgccgat
gccggtgccgagcgcgagggcgccgtcgtgcttgccagccgcaacggaaaggacctgacc
gacaccttccccgcggccgtcgaactcacccggctgctgcggggggaggcggccgagcgg
ggcggggccgtcctcgatggcgagctggtggcgttggacgaccggggccgccccgacttc
ggtctgctgcaggcggcgctcggcgacgggcccggcgtcaacgcggccggcgaccccatc
gagctgcgctatctcgtcttcgacctgctgcagctcggcgcgcccggggacccggaggac
cggcagcgctccctgctgcgcatcccctggggtgaacgacgcgagctcctgcgcgaggtg
ctgggtactggtggcgatgccgtgtcggtgccgccggcccacaccggcaccctcgcccag
gcgcagcgggcgagccgggggctggggctggagggggtcgtcgccaagcgggtcgatgcg
gtctatctgcccggccagcgcggttcggcgtgggtgaagctcaagacgcaacgccaccag
gaggtggtcgtcatcggggtccggcaggggcgcggcggccggtccggtggcatcgggtcg
ctgctggtggcggtgggggacgacgagggcgaactgcgctacgccggccgggtggggacg
ggcttcagcgccgcccagctggccgacatcgagaagacgctgcgccgcatcgagcgcaag
acgcccccggtggacgacgtgccggcggccgaccgcacggacgcctggtgggtgacgccg
cggctggtgggcgaggtgtccctggccgggcgcacgcgcgaccagcgggtgcggcaggcg
gtctggcgggggtggcgaccggacaaggaggccggcgaggtccgatgggaggtgtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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