KEGG   Lactobacillus acidophilus FSI4: SD55_0258
Entry
SD55_0258         CDS       T03681                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
laf  Lactobacillus acidophilus FSI4
Pathway
laf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:laf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SD55_0258
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:laf03019]
    SD55_0258
   03009 Ribosome biogenesis [BR:laf03009]
    SD55_0258
Enzymes [BR:laf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SD55_0258
Messenger RNA biogenesis [BR:laf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SD55_0258
Ribosome biogenesis [BR:laf03009]
 Prokaryotic type
  rRNA helicases
   SD55_0258
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Phage_connect_1 Dor1
Other DBs
NCBI-ProteinID: AJP45729
Position
258099..259586
AA seq 495 aa
MKFSELGLNEALLKAIKRSGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPIL
QIIDKKEKAIQAIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLKHHV
PSILVGTPGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRNQTLL
FSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP
DLAVVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTK
KKMSPLRPPTDDQALRGQLKQAKAQIEDLINSDLGKYTQDASELLDNYSAVDLVAAFLKN
LSKDSTDIKVKITPEKPLPYKGDGRRNRRGHGRGRNNNRNHGNYRRRNNNYRHNGNRGKR
GRGNGHEFVIKSKEK
NT seq 1488 nt   +upstreamnt  +downstreamnt
ttgaaattttcagaattaggattaaacgaagcgcttcttaaagcgattaaacgctcagga
tttgaagaagcaactccaatccaggaacaaactattccccttgctctagagggtaaggat
gtaattggccaagcacaaactggtactggtaagactgctgcatttgggttaccaatttta
caaataattgataaaaaagaaaaggcaattcaagcaattattattgaaccaactcgtgaa
cttgctattcagactcaagaagagctctttcgtttaggtcgcgatgaacgtgcacatgta
caagtagtatatggtggtgctgatattggccgtcaaattcgttcattaaagcatcatgta
ccatcaattttagtggggacaccaggccgtttacttgatcatttaaagcgtggcacaatt
gacttagataaagttaagactgtagttttagatgaagcagatgaaatgcttgatatggga
tttattcaagatattgaaagtattttgaaatatgctaagaatcgtaatcaaacattgctt
ttcagtgcaacaatgccaaagccaattttgcgaattggtgaaaagttcatgaacaatcct
gaaattgttcaaattaaagctaaagaacttactgcagatttaattgatcaatactttgtt
cgtgcaaaggaatcagaaaaatttgatattatgtgtcgtttaattgatgtacaaggacca
gatttagctgtggtctttggtcgaactaagcgacgcgtagatgaacttacacgcggttta
caagctcgtggctacaatgctgcaggaattcacggtgacttatcacaagcacgtagaatg
gccgtattgaagcgattccgtgaaggtaagcttgatattttggtcgcaacggacgttgct
gctcgtggacttgatatttcaggtgtaactcacgtttataattacgatattccacaggat
cctgactcttatgttcaccgtatcggcagaactggacgtgcaggtcaaaacggaatttct
gttactttcgtaacacctaatgaaattggctatatgcgtacaattgaacaacttaccaag
aagaagatgtcaccacttcgtccaccaacagacgatcaagcacttcgtggtcaattgaaa
caagctaaggcacaaattgaagacttaataaatagtgatcttggtaaatatacccaagat
gctagtgaacttttggataattattctgcagttgatttagttgctgcatttttaaagaat
ttatctaaggattcaactgatattaaggttaagattacaccagaaaaaccattaccatac
aagggcgatggtcgccgtaatcgtagaggacacggtcgtggccgcaacaataatcgcaat
catggcaattatcgtcgccgtaataataattatcgccataatggtaatcgcggcaaacgt
ggtcgtggcaatggacacgaatttgttattaaaagcaaagaaaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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