KEGG   Lactobacillus acidophilus FSI4: SD55_0278
Entry
SD55_0278         CDS       T03681                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
laf  Lactobacillus acidophilus FSI4
Pathway
laf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:laf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SD55_0278 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:laf03021]
    SD55_0278 (rpoB)
   03400 DNA repair and recombination proteins [BR:laf03400]
    SD55_0278 (rpoB)
Enzymes [BR:laf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SD55_0278 (rpoB)
Transcription machinery [BR:laf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SD55_0278 (rpoB)
DNA repair and recombination proteins [BR:laf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SD55_0278 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AJP45746
UniProt: A0A809KA55
Position
279364..283005
AA seq 1213 aa
MLNGHVVNYGKHRTRRSFSRIKEVLKLPNLTDVQTESYKWFLDKGIKEVFDDIMPISDFS
GKLSLEYVGYKLQKPKYTVDEARDHDATYAAPMHVTLKLTNQETGEIKTQDVFFGDLPLM
TESGSFIVNGAERVIVSQLVRSPGVYYTGDYDKNGRQIFGTTVIPNRGAWLEYETDAKNV
SYVRVDRTRKLPLTVLIRAMGIGSDSEIIEMFGQSDTLQFTLDKDVHKNPADSRVAEALK
DIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGRYKINKKLSLKNRLYGQTLAETL
ADPDTGEIIVKKDTVVTHEIMDKLAPYLDRDDFKMVTYQPSKEGVLPDPITVQEIKVYSK
VDPEREVKLMSNGHIDADVKHLTPADVLASINYFFALQDKIGTTDDIDHLGNRRIRRVGE
LLQNQFRIGLARMERVVRERMSIQDPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQH
NPLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLASY
AIINKYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIIAGANTPLNDDGSFKEDIILA
RQKEDNVEVTPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAAPLINPH
SSLVGTGMEYRAAHDSGAALIAKAAGTVEYVDADEIRIRREDGTLDKYTLEKYRRSNNSK
SYNQTPNVKLGDHVDESDVIANGPTMDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLV
KDDVYTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRVGAEVHDGDIL
VGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKVYTREAGDELS
PGVNTMVRVYIAQKRKIQVGDKMSGRHGNKGTVAAVMPEEDMPYLPDGTPVDICLNPMGV
PSRMNIGQLLELHLGAAARQLGIHVATPVFDGANENDVWDTVRQAGMDKDGKTVIYDGRT
GEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGERIPKPGVPESFRVLVKELQSLGLDI
RVLDMDHNEIELRDMDEDSSEHLNIDTLSRMAEEQEKKKLAEETGKSENKEDSNETADKP
VAPADESDGKVSK
NT seq 3642 nt   +upstreamnt  +downstreamnt
ttgttaaatggacacgtagtgaactacggtaaacatcgaactagacgtagcttctcccga
attaaggaagtattgaagttacctaacttaactgatgttcaaaccgaatcatataagtgg
tttcttgataaaggcattaaagaagtctttgatgacattatgcctattagtgacttctca
ggtaagctttcattagagtatgtaggctacaaacttcaaaagcctaagtatacagttgat
gaagctcgtgatcatgatgcaacttatgctgcaccaatgcatgtaactttgaagcttact
aaccaagaaactggtgaaattaagactcaagatgtattctttggcgatttaccattaatg
actgaatcaggttcattcatagttaatggtgctgaaagagttattgtttctcaattagtt
agatctccaggtgtttactacactggtgattatgataagaatggtcgtcaaatttttggt
actactgttattcctaaccgtggtgcttggcttgaatatgaaactgatgctaaaaatgtt
tcttatgttcgagtagaccgtactcgtaagttgcctcttactgtattgattagagcaatg
ggtattggctcagacagtgaaattattgaaatgtttggtcaaagtgatactttgcaattt
actttggacaaggatgttcataaaaatccagctgactcacgcgtagctgaagctttgaag
gatatttacgaaagacttcgtccaggtgaaccaaagactactgattcatcacgttcactt
ttgtatgctcgtttctttgacccacgtcgttatgacttggcaccagttggacgttacaag
attaacaagaagctttctcttaagaatcgtttgtatggtcaaactttagctgaaacttta
gctgatcctgatactggtgaaattattgttaagaaggatactgtagttactcacgaaatt
atggacaagttagctccataccttgatcgcgatgacttcaagatggtcacttaccaacct
tcaaaagaaggtgtattaccagatcctattacagttcaagaaattaaggtttactcaaag
gtagatcctgaacgtgaagttaaattaatgtcaaatggtcacattgatgcagatgttaag
catttgactccagctgatgttttagcttcaattaattacttctttgctttacaagataag
atcggtactactgatgatatcgaccacttgggtaaccgtcgtattcgtcgtgttggtgaa
cttcttcaaaatcaatttagaattggtttggcaagaatggaacgtgttgttcgcgaaaga
atgtcaatccaagacccatcaactgttaccccacaacaattgattaacattcgtccaatt
gttgcaagtatcaaggaattcttcggttcatcacagctttcacagtttatggaccaacac
aacccattgggtgaattgacacataaacgtcgtatgtcagccttagggcctggtggttta
actcgtgaccgtgccggatatgaagttcgtgacgttcactatactcactatggtcgtttg
tgtcctattgaaactccagaaggacctaacattggtttgattaactcacttgcttcatac
gcaatcattaataagtatggtttcattgaaacaccatatcgtcgtgtttcttgggatacc
cacaaggtaaccgataaaatcgattatttgactgctgatgaagaagataactacattatt
gccggtgctaacactcctttgaatgatgatggttcatttaaagaagacataattttggct
cgtcaaaaggaagataacgtcgaagttactccagataagattgactacatggacgttatc
cctaagcaagttgtttcagtagcttcagcatgtatcccattcctagaaaacgatgactct
aaccgtgctttgatgggtgccaaccagcaacgtcaggctgctcctttgattaacccacac
agttcccttgttggtactggtatggaatatcgtgcagctcacgactcaggtgctgcatta
attgctaaggcagctggtactgttgaatacgttgatgctgatgaaattcgtattagacgt
gaagatggtactttagacaagtacactcttgaaaaataccgtcgttcaaacaactctaag
tcatacaaccaaactcctaatgttaaattgggtgatcacgttgatgaaagtgatgtaatt
gctaatggtccaactatggatcatggtgaacttgcattaggtcaaaacccactcattgct
ttcatgacttggaacatgtacaactatgaagatgccatcatgctttcagaacgtttggtt
aaggatgatgtatatacttcaattagtatcgaagattatgaatcagaagctcgcgatact
aagcttggaccagaagaaattacaagagaacttcctaacatcggtgaagatgctttgaag
gatcttgatgctgatggtatcgttcgtgtcggtgctgaagttcatgatggtgatattttg
gtgggtaaggtaactcctaagggtgtaactgaattatctgctgaagaaagattacttcac
gctatctttggtgaaaaggctcgtgaagttcgtgatacttcacttcgtgtaccacatggt
ggtggcggtatcgttcaagacgttaaggtttatactcgcgaagccggcgatgaactttca
ccaggtgtaaatactatggttcgtgtttacattgcacaaaagagaaagattcaagttggg
gacaagatgtctggtcgtcacggtaacaagggtactgttgctgcagttatgccagaagaa
gatatgccataccttccagatggtactccagtagatatttgtttgaacccaatgggtgtt
ccatcacgtatgaacattggacagcttcttgaattgcacttgggtgctgctgctcgtcaa
ttaggtattcacgtagcaactccagtatttgatggtgctaatgaaaatgatgtttgggat
actgtacgtcaagcgggtatggataaagatggtaagacagttatttatgatggtcgtacc
ggtgaaccattccacaaccgtgtgtcagtaggtgtcatgcactacttgaaacttactcac
atggttgacgacaagatccacgctcgttcaattgggccatactcattggttactcaacaa
cctttgggtggtaaagctcaattcggtggacagcgttttggtgaaatggaagtttgggct
cttgaagcttatggtgcagcttacacattacaagaaattttgacttataagtcagatgat
gttgttggtcgtgtaaaggcatatgaagctattgttaagggcgaaagaattcctaagcca
ggtgtaccagaatcattccgtgttcttgttaaggaactccaatcattaggtttggatatt
cgtgtccttgatatggatcataatgaaattgaacttcgtgatatggatgaggattcaagt
gaacacttgaatatcgatactttgtcacgtatggcagaagaacaagaaaagaagaagtta
gccgaagaaactggaaaatcagagaataaagaagatagtaatgaaactgcagataagcca
gtagctcctgcagatgaatctgacggtaaagtttctaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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