KEGG   Lactobacillus acidophilus FSI4: SD55_0554
Entry
SD55_0554         CDS       T03681                                 
Symbol
dnlJ
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
laf  Lactobacillus acidophilus FSI4
Pathway
laf03030  DNA replication
laf03410  Base excision repair
laf03420  Nucleotide excision repair
laf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:laf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SD55_0554 (dnlJ)
   03410 Base excision repair
    SD55_0554 (dnlJ)
   03420 Nucleotide excision repair
    SD55_0554 (dnlJ)
   03430 Mismatch repair
    SD55_0554 (dnlJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:laf03032]
    SD55_0554 (dnlJ)
   03400 DNA repair and recombination proteins [BR:laf03400]
    SD55_0554 (dnlJ)
Enzymes [BR:laf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SD55_0554 (dnlJ)
DNA replication proteins [BR:laf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SD55_0554 (dnlJ)
DNA repair and recombination proteins [BR:laf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SD55_0554 (dnlJ)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SD55_0554 (dnlJ)
   MMR (mismatch excision repair)
    DNA ligase
     SD55_0554 (dnlJ)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SD55_0554 (dnlJ)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT zf-NADH-PPase RNA_pol_A_CTD bCoV_SUD_C BRCT_2 RUBY_RBDX
Other DBs
NCBI-ProteinID: AJP45976
Position
517921..519927
AA seq 668 aa
MADITLDEAKKEASLLRNQLDKWADAYYSKDAPEVEDNVYDQKYSRLLELEKQFPEIVTP
DSITQRVGGEIDSDFTKVEHAIPMLSMGDVFSKDELKDFDQRMQKLVGHPVEYNVELKID
GLSLSLEYENGKLMRASTRGNGYVGEDVTANARYIADIPQTLPEPLTIEVRGECYMGKEA
FAKLNEERENEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPEDITSQHEA
IKRMQELGFHTNETGQKLASLEEIFAFIDEYTARRDSLAYGIDGIVLKIDDLNIERSLGN
TVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVARASLHNPD
YLNEKDVRLGDTVKLHKAGDIIPEISEVVLSKRPVDSVPYVIPENCPSCGHKLVHLQDEV
ALRCINPSCPAQVEEGITHFASRPAMNIAGLGPKIVKQLIANDLVHNVADLYHLSAEDLA
QLDHFKEKSINNLLTAIDNSKKNSVELLITGLGIDHVGAKAARLIAQKFKNLAKIMSLGV
QDLASIDTIGMTIAESMTTYFAQPEAQEMIADLEKSGLNMEYLGEDEPEDIPDNPFKDKT
VVLTGKLEHYTRSEFTKRLQALGAKVTGSVSKKTNYVIYGQDAGSKYNKAEQLGIPLLTE
EEAIAQIK
NT seq 2007 nt   +upstreamnt  +downstreamnt
atggcagatattactcttgatgaggctaaaaaagaagctagtttacttagaaatcagcta
gataagtgggctgatgcatattattcaaaagatgcacctgaagttgaagataatgtttat
gatcaaaaatatagccgcttgcttgaattagaaaaacaattcccagagattgtcacgcct
gattcaattactcaacgagtaggtggcgaaatcgacagtgactttactaaagttgaacat
gctatcccgatgctttctatgggggatgttttctcaaaagatgagttgaaagattttgat
caacgcatgcagaaattagtgggtcatccagtcgagtataatgttgaattgaagattgat
ggtttatcactgtcacttgaatatgaaaatggtaaattaatgcgtgcatcaactcgtggt
aatggttatgttggtgaagacgtaaccgccaatgcgcgttatattgcagatattccgcag
actttacctgaacctttgactattgaagttcgcggagaatgttacatgggtaaagaagct
tttgccaagttaaatgaagaacgtgaaaatgaaggattaagtgtttttgccaatccgcgt
aatgctgctgcaggttcacttcgtcagcttgatcccaaagtaactaaaaaaagacaatta
agtacttttatctatacttgggtaaatccaccagaagatataactagtcagcacgaagca
attaaacggatgcaagaattgggttttcacactaatgaaactgggcaaaaattagcaagc
cttgaggaaatttttgcttttatcgatgaatatactgcaaggcgtgatagcctagcttat
ggtattgatggaattgttttaaaaattgacgatctaaatattgaacgaagcttaggcaat
actgttaaagtgccacgttgggagattgcttataagtttccaccagaagagcaggaaact
attgtccgcgatattgtctggacagtcggcagaactggtgtagttacaccaactgccgta
atggatccggttcagcttgcgggaaccacggtagcacgtgcctcacttcataatcctgat
tatttgaatgaaaaagacgttcgtcttggtgacacagttaagctccataaagctggggat
attattccagaaatttctgaagttgtgttatcaaaaagaccagttgattcagtgccttat
gtaattcctgaaaattgtccttcatgtggacataagctagttcatttacaagatgaagta
gcacttcgctgtatcaatccgtcttgtccagctcaagtagaagaaggaattacgcacttt
gcttcacgacctgctatgaatattgcgggtttgggaccaaaaattgtgaagcaattaatt
gctaatgatttggttcataatgttgccgatctttatcacttatctgcagaagatttagca
cagcttgatcactttaaagaaaaatcaattaacaatttattaactgcaatcgataattcg
aagaaaaattctgtagaattattgattactggtcttggaattgaccatgtcggtgctaaa
gctgctcgattaattgcccaaaagtttaaaaatctggcaaagattatgtctctaggggtg
caagatcttgcgtctatagatacaataggcatgacaattgcagaatcaatgacaacttat
tttgctcaaccagaagcacaagaaatgatcgctgacttagaaaagagtggattaaatatg
gaatatcttggtgaagatgaacctgaagatattccagataatccatttaaggacaagaca
gttgtattaactggaaaactagagcattatactagaagtgaatttactaagagattgcaa
gccttaggagctaaagttacaggatccgtttctaaaaagactaattatgtgatttatggt
caagatgctggctctaaatataataaggctgagcaattggggattccgcttttaacagaa
gaagaagcaattgcacaaatcaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (31)   

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