KEGG   Lactobacillus amylovorus 30SC: LAC30SC_01385
Entry
LAC30SC_01385     CDS       T01436                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lai  Lactobacillus amylovorus 30SC
Pathway
lai03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lai00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LAC30SC_01385 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lai03021]
    LAC30SC_01385 (rpoB)
   03400 DNA repair and recombination proteins [BR:lai03400]
    LAC30SC_01385 (rpoB)
Enzymes [BR:lai01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LAC30SC_01385 (rpoB)
Transcription machinery [BR:lai03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LAC30SC_01385 (rpoB)
DNA repair and recombination proteins [BR:lai03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LAC30SC_01385 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ADZ06468
UniProt: F0TIG1
Position
291581..295222
AA seq 1213 aa
MLNGHVVNYGKHRTRRSFSRIKEVLKLPNLTDVQTESYKWFLDKGIKEVFDDIMPISDFS
GKLSLEYVGYKLQKPKYTVDEARDHDATYAAPMHVTLKLTNQETGEIKTQDVFFGDLPLM
TESGSFIVNGAERVIVSQLVRSPGVYYTGDYDKNGRQIFGTTVIPNRGAWLEYETDAKNV
SFVRVDRTRKLPLTVLIRAMGISSDSDIIDMFGQSDTLQFTLDKDVHKNPADSRVAEALK
DIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGRYKINKKLSLKNRLYGQTLAETL
ADPDTGEIIAKKDTVVNHEVMDKLAPYLDRDDFKMVTYQPSKEGVLPDPIIVQEIKVYSK
VDPEREVKLMSNGHIAADVKHLTPADVLASINYFFALQDKIGTTDDIDHLGNRRIRRVGE
LLQNQFRIGLARMERVVRERMSIQDPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQH
NPLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLASY
AIINKYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIIAGANTPLNDDGSFKENIILA
RQKEDNVEVTPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAAPLINPH
GSLVGTGMEYRAAHDSGAALIAKAAGTVEYVDANEIRIRREDGTLDKYTLEKYRRSNNSK
SYNQTPNVKLGDHVDVSDVIANGPTMDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLV
KDDVYTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRVGAEVHDGDIL
VGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKVYTREAGDELS
PGVNTMVRVYIAQKRKIQVGDKMSGRHGNKGTVAAVVPEEDMPYLPDGTPVDICLNPMGV
PSRMNIGQLLELHLGAAARQLGIHVATPVFDGANENDVWDTVRQAGVDKDGKTVIYDGRT
GEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDVVGRVRAYEAIVKGERIPKPGVPESFRVLVKELQSLGLDI
RVLDMNHKEIELRDMDGESSEHLNIDTLSRMAEEQEKKKLAEETEKSEDKKDDEKTADKP
AAPADKSDGKVSK
NT seq 3642 nt   +upstreamnt  +downstreamnt
ttgttaaatggacacgtagtgaactacggtaagcatcgaactagacgcagtttttcccga
attaaggaagtattgaagctgccaaacttgaccgatgttcaaaccgaatcatataagtgg
tttcttgataaaggcattaaagaagtctttgacgacattatgcctattagtgacttctca
ggtaagctttcattagaatatgttggctacaagcttcaaaagcctaagtacacagttgat
gaagctcgtgatcacgatgcaacttatgctgcaccaatgcacgttactttgaagcttact
aaccaagaaactggtgaaattaagactcaagatgtattctttggcgatttaccattgatg
actgaatcaggttcattcatcgttaatggtgctgaaagagttatcgtttctcaattagta
agatctcctggtgtatattacactggcgactacgacaagaacggtcgtcaaatctttggt
actactgttattcctaaccgtggtgcttggcttgaatatgaaactgacgctaagaatgtt
tcatttgttcgtgttgaccgtactcgtaagttgccacttacagttttgattagagcaatg
ggtattagctctgacagcgacattattgatatgtttggtcaaagcgatactttgcaattt
actttggacaaggatgttcacaagaacccagctgactcacgtgtagctgaagctttgaag
gacatttacgaaagacttcgtccaggtgaaccaaagactactgattcatcacgttcattg
ctatatgcccgtttctttgatccacgtcgttacgacttggcaccagttggtcgttacaag
atcaacaagaagctttcacttaagaaccgtttgtacggtcaaactttagctgaaactttg
gctgatccagatactggtgaaatcattgctaagaaggatactgttgttaaccacgaagta
atggacaagcttgctccataccttgatcgtgatgacttcaagatggtaacttaccaacct
tcaaaggaaggtgtattgccggatcctattattgttcaagaaattaaggtttactcaaag
gttgaccctgaacgtgaagttaagttgatgtctaacggtcatattgctgcagatgttaag
cacttaactccagctgatgttttggcttcaatcaactacttctttgcattgcaagacaag
atcggtactactgatgatatcgaccacttgggtaaccgtcgtattcgtcgtgttggtgaa
cttcttcaaaaccaattcagaattggtttagcaagaatggaacgtgttgttcgtgaaaga
atgtcaatccaagatccatcaactgttactccacaacaattgatcaacattcgtccaatt
gttgcaagtatcaaggaattcttcggttcatcacaactttcacagttcatggaccaacac
aacccattaggtgaattgacccacaagcgtcgtatgtcagctttagggcctggtggtttg
actcgtgaccgtgccggatatgaagttcgtgacgttcactatactcactatggtcgtttg
tgtcctattgaaacacctgaaggtcctaacattggtttgatcaactcacttgcttcatat
gcaatcattaacaagtatggtttcattgaaactccataccgtcgtgtttcttgggatact
cacaaggtaactgacaagatcgactacttgactgctgatgaagaagataactacatcatt
gccggtgctaacactcctttgaatgatgatggttcatttaaggaaaacattattttggct
cgtcaaaaggaagataacgtcgaagttactccagacaagattgactacatggacgttatt
cctaagcaagttgtttcagttgcttcagcatgtattccattccttgaaaacgacgactcc
aaccgtgctttgatgggtgccaaccagcaacgtcaggctgctcctttgatcaacccacac
ggttcacttgttggtactggtatggaatatcgtgcagctcacgattcaggtgccgcttta
attgctaaggctgcaggtactgttgaatacgttgatgccaacgaaatccgtattagacgt
gaagatggcaccttagacaagtacactcttgaaaagtaccgtcgttcaaacaactctaag
tcatacaaccaaactcctaatgttaaattaggtgatcacgttgacgtaagcgatgttatt
gctaacggtccaactatggatcacggcgaacttgctttaggtcaaaacccattgatcgca
tttatgacttggaacatgtataactacgaagatgctatcatgctttcagaacgtttggtt
aaggatgatgtctacacttcaattagtatcgaagactacgaatcagaagcccgtgatact
aagcttggtcctgaagaaatcactagagaattgcctaacattggtgaagatgcattgaag
gatcttgatgccgatggtatcgttcgtgtcggtgcagaagttcacgatggcgacattttg
gtaggtaaggtaactcctaagggtgtaaccgaattatctgctgaagaaagattacttcac
gctatctttggtgaaaaggctcgtgaagttcgtgatacttcacttcgtgtaccacacggt
ggtggcggtatcgttcaagacgttaaggtttatactcgtgaagccggcgacgaactttct
ccaggtgtaaacactatggttcgtgtctacattgcccaaaagagaaagatccaagttggt
gacaagatgtctggtcgtcacggtaacaagggtactgttgccgcagttgttccagaagaa
gatatgccataccttccagatggtactccagtagacatttgtttgaacccaatgggtgtt
ccatcacgtatgaacattggacagcttcttgaattgcacttgggtgctgctgcccgtcaa
ttaggtattcacgttgcaactccagtatttgatggtgcaaacgaaaacgatgtttgggat
actgttcgtcaagctggtgttgataaagacggtaagactgttatttacgatggtcgtacc
ggtgaaccattccacaaccgtgtatcagttggtgtcatgcactacttgaaacttactcac
atggttgacgacaagatccacgctcgttcaatcgggccttactcattggttactcaacaa
cctttgggtggtaaagctcaattcggtggtcagcgtttcggtgaaatggaagtttgggct
cttgaagcttacggtgctgcttacacattacaagaaatcttgacttacaagtcagatgac
gttgttggtcgtgtaagagcatatgaagctatcgttaagggcgaaagaattcctaagcca
ggtgtacctgaatcattccgtgttcttgttaaggaacttcaatcattaggtttggacatt
cgtgttcttgatatgaaccacaaggaaattgaacttcgtgatatggatggagaatcaagt
gaacacttgaatatcgatacattgtcacgcatggcagaagaacaagaaaagaagaagtta
gccgaagaaactgaaaaatcagaagataaaaaagatgacgaaaagactgcagacaagcca
gcagctcctgcagacaaatctgacggtaaagtttctaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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