KEGG   Loxodonta africana (African savanna elephant): 100671008
Entry
100671008         CDS       T04351                                 
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
lav  Loxodonta africana (African savanna elephant)
Pathway
lav03018  RNA degradation
lav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100671008 (LSM4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100671008 (LSM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lav03019]
    100671008 (LSM4)
   03041 Spliceosome [BR:lav03041]
    100671008 (LSM4)
Messenger RNA biogenesis [BR:lav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100671008 (LSM4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100671008 (LSM4)
Spliceosome [BR:lav03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100671008 (LSM4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 100671008
NCBI-ProteinID: XP_010591529
Position
Unknown
AA seq 139 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKDEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
PGTGRGQQEKKPGRQAGKQ
NT seq 420 nt   +upstreamnt  +downstreamnt
atgctccccttgtcgttgctgaagactgcccagaatcaccccatgctggtggagctgaag
aacggggagacgtacaacgggcacttggtgagctgtgacaactggatgaacatcaaccta
cgcgaggtcatctgcacgtcccgggacggggacaagttctggcggatgcccgagtgctac
atccgcggtagcaccatcaagtacctgcgcatccccgacgagatcatcgacatggtcaag
gacgaggtggtggccaagggccgtgggcgtggtggcctacagcagcagaagcagcagaag
ggccgcggcatggggggcgctgggcgaggtgtttttggcggccgtggccgcggcgggatc
ccgggcactggcaggggccaacaggagaagaagcctggccgacaggcagggaagcagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (1)   
   Pfam (1)   
All databases (38)   

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