KEGG   Loxodonta africana (African savanna elephant): 100671941
Entry
100671941         CDS       T04351                                 
Symbol
CHD4
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 4
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
lav  Loxodonta africana (African savanna elephant)
Pathway
lav03082  ATP-dependent chromatin remodeling
lav05165  Human papillomavirus infection
lav05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:lav00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    100671941 (CHD4)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    100671941 (CHD4)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    100671941 (CHD4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lav03036]
    100671941 (CHD4)
Chromosome and associated proteins [BR:lav03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    100671941 (CHD4)
  Chromatin remodeling factors
   NuRD complex
    100671941 (CHD4)
SSDB
Motif
Pfam: SNF2-rel_dom CHDCT2 CHDII_SANT-like Helicase_C CHDNT DUF1087 Chromo PHD ResIII HDA2-3 zf-HC5HC2H DEAD zf-HC5HC2H_2 ADDz_Dnmt3b PHD_2
Other DBs
NCBI-GeneID: 100671941
NCBI-ProteinID: XP_010589128
Position
Unknown
AA seq 1890 aa
MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP
RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK
SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA
PPPPPVEVPIRKAKTKEGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKR
SSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYET
DHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCVMSEKFWKKFRNG
EGILILSPEKGPGIRSSYLKWGLIILXQGXCCGLYHLLPLVMIYCWIISFSQCPALKGKV
QKILIWKWGQPPSPTPVPRPPDADPSTPSPKPLEGRPERQFFVKWQGMSYWHCSWVSELQ
LELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKNKDPKFAEMEERFYRYGIKPEWM
MIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNHRELMRGEE
GRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWA
QGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMY
VVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAIL
GSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPE
RFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQ
KKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDG
SALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITG
NMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHR
IGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFG
TEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKV
AQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQ
VNYNDGSQEDRDWQDDQSDNQSDYSVASEEGDEDFDERSEAPRRPSRKGLRNDKDKPLPP
LLARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSL
FMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELA
EVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPAPPTEDGIKIEENSLKEEENTEGEKE
VKSAVPEATVECTQPPVPAAEDEKVLVDPPEGEEKVEKAEAKERTEEPMETEPKGVADVE
KVEEKSAIDLTPIVVEDKEEKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNIAD
GGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQNDPRYAILN
EPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALNTRF
AEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARIPPVA
VRLQMSERNILSRLANRAPEPTPQQVAQQQ
NT seq 5673 nt   +upstreamnt  +downstreamnt
atggcgtcgggcctgggctccccgtccccttgctcagcgggcagtgaggaggaggatatg
gatgcacttttgaacaacagcctgcccccaccccacccagaaaacgaggaggacccagaa
gaagatttgtcagaagcagaaactccaaagctcaagaagaagaaaaaacctaagaaacct
cgggaccccaaaatccctaagagcaaacgccaaaaaaaggagctgggagacagctctggg
gaggggccggagtttgtggaggaggaggaagaggtggctctgcgctcagacagtgagggc
agcgactacactcctggcaagaagaagaagaagaagcttggacctaagaaagaaaagaag
agcaaatccaagcgaaaggaagaagaggaggaggatgacgatgatgatgattcaaaggag
cctaaatcatctgctcagctcttggaagactggggcatggaagacattgaccatgtgttc
tcagaggaggattatcgcactctcaccaactataaggccttcagccagtttgtccgaccc
cttattgctgccaaaaaccccaagattgctgtctccaagatgatgatggttttgggtgca
aagtggcgggagttcagtaccaacaaccccttcaaaggcagttctggggcctcagtggca
gcggcagcagcagcagcagtggctgtggtggagagcatggtgactgccactgaggttgca
ccaccgcctccccctgtggaggtgcctatccgcaaggccaagaccaaggagggcaaaggt
cctaatgctcggaggaagcccaagggcagccctcgtgtacctgatgccaagaagcctaaa
cccaagaaagtagctcccctgaaaatcaagttgggaggttttggttccaagcgtaagaga
tcatcgagtgaagatgatgacctggatgtggagtctgactttgatgatgccagtatcaat
agttattctgtttctgatggctccaccagccgcagtagccgcagccgcaaaaaactccga
accacaaaaaagaaaaagaaaggcgaggaggaggtgactgctgtggatggttatgagaca
gaccaccaggactattgcgaggtgtgccaacaaggcggtgagatcatcctgtgcgatacc
tgtccccgagcgtaccacatggtctgcctggatccggacatggagaaggctcctgagggc
aagtggagctgcccacactgtgtgatgtcagagaaattctggaagaagttcagaaatgga
gagggaattctaatactctctcccgagaagggtcctgggattagatcttcttatttgaaa
tggggtttaataatcctttgacaaggttgatgctgtgggctgtaccatctcctccctttg
gttatgatttattgttggatcatctctttctctcagtgtccagctctgaagggcaaagtt
cagaagatcctgatctggaagtggggccagccaccgtctcccacaccagtgcctcggcct
ccagatgctgatcccagcactccctctcccaagccgttggaggggcgaccagagcggcag
ttctttgtgaaatggcaaggcatgtcttactggcactgctcctgggtgtctgaattgcag
ctggagctgcattgtcaggtgatgttccgaaactatcagcggaagaatgatatggatgag
ccaccttctggagactttggtggcgatgaagagaagagccggaaacgaaagaacaaggac
cctaaatttgcagagatggaggaacgtttctatcgctatgggataaaacctgagtggatg
atgattcaccgaatcctcaaccacagtgtggataagaagggccatgtccactacctgatc
aagtggcgagacttaccctatgatcaggcatcctgggagagtgaggatgtggaaatacag
gactatgacctgtttaagcagagctattggaatcacagggagctaatgaggggtgaggaa
ggacggccaggcaagaagctcaagaaagtgaagctgaggaagctggagaggcctcctgaa
acaccaacagttgatccaacagtgaagtatgagcgacagccagagtacctggatgccaca
ggtggaaccctgcatccctatcagatggagggtttaaactggctgcgcttctcttgggcc
caaggcaccgatactattttggctgatgagatgggccttgggaagactgtacagacagca
gtcttcctctattccctctataaggagggtcattccaaaggccccttcctagtcagtgcc
cccctttctaccatcatcaactgggagcgggagtttgaaatgtgggctccagatatgtat
gtggtgacctatgtaggtgacaaggacagccgtgccatcatccgggagaacgagttctcc
tttgaagacaatgccattcgtggtggcaagaaggcctcccgaatgaagaaagaggcatct
gtgaaattccacgtgctactgacgtcctatgagttgatcaccattgacatggctatcttg
ggttctatcgattgggcctgcctcattgtggacgaagcccatcggctcaagaacaatcaa
tcaaagtttttccgggtcctgaatggttactcactgcagcacaagctgttgctgactggg
actccattacaaaacaatctagaagagttgtttcatctgctcaactttctcactcctgag
aggttccacaacttggaaggcttcttggaggaatttgctgatattgccaaggaggaccag
attaaaaaactgcatgacatgttgggacctcacatgttgcggcggctcaaagccgatgtg
ttcaagaatatgccatccaagacagagctgattgtgcgtgtggagctgagccctatgcag
aagaaatactacaagtacatcctcactcgaaattttgaagcactcaatgctcgaggtggt
ggcaaccaggtctccctgctgaatgtagtgatggatcttaagaagtgctgcaaccatcca
tatctcttccctgtggctgcaatggaagcccctaagatgcctaatgggatgtatgatggc
agtgccctaatcagagcatctgggaaattactgctgctacagaagatgctcaagaacctt
aaagagggtgggcaccgtgtactcatcttctcccagatgaccaaaatgctggacctgcta
gaggatttcttggaacatgaaggttataaatatgaacgtattgatggtggaatcacgggg
aacatgcgtcaagaggccattgaccgctttaatgccccaggtgctcagcagttctgcttc
ttgctttccactcgagctgggggccttggaatcaatctggccacagctgacaccgttatc
atctatgactctgactggaacccccataatgacatccaggcgtttagcagagctcaccgt
attggccaaaacaagaaggtgatgatctatcggtttgtgacccgtgcttccgtagaggag
cgtatcacacaggtggcaaagaagaagatgatgctgacgcacctagtggtgcggcctggg
ctaggttccaagactggatccatgtccaaacaggagcttgatgatatcctgaaatttggc
actgaggagctattcaaggatgaagccacagatggaggaggagacaacaaagagggagaa
gatagcagcgttatccattatgatgataaggccattgagagattactagaccgtaaccag
gatgagactgaagacacagaactgcagggcatgaatgaatatttgagctcatttaaagta
gcccagtatgtggtgcgggaagaagaaatgggggaggaagaggaggtagaacgggaaatc
ataaaacaggaagaaagtgtggaccctgactactgggagaaattgctgcggcaccattat
gagcagcagcaagaagatctggcccgaaatctgggcaaaggaaaaagaatccgtaaacag
gtcaactacaatgatggctcccaggaggaccgagattggcaggacgaccagtccgacaac
cagtccgattactcggtggcttcagaggaaggtgatgaagactttgatgaacgttcagaa
gctccccgcaggcccagtcgtaagggcctgcggaatgacaaagataagccattgcctcct
ctgttggctcgcgttggtgggaatattgaagtacttggttttaatgctcgccagcgaaaa
gcttttcttaatgcaattatgcgatatgggatgccacctcaggatgcttttaccacccag
tggcttgtgagagatctgcgaggcaaatcagagaaggagttcaaggcctacgtctctctc
tttatgcggcatttatgtgagccaggagcagatggggctgagacctttgctgatggggtc
ccccgagaaggcctgtctcgccagcatgtccttactaggattggtgtcatgtccttgatt
cgcaagaaggttcaggagtttgaacacgttaatgggcgctggagcatgcctgaactggct
gaagtagaggaaaacaagaaaatgtcccagccggggtcaccttccccaaagactcctaca
ccttccactccaggggacacgcaacccaatactcctgcacctgccccgcccactgaggat
gggataaaaatagaggaaaatagcctcaaagaggaagagaacacagaaggagaaaaggag
gttaaatctgcagtccctgaggccactgttgaatgtacacagccccctgtccctgcagca
gaggatgaaaaggtccttgttgaccctcctgagggagaggagaaagtggaaaaggccgag
gcgaaggagagaacagaggagcctatggagactgagcccaaaggtgttgctgatgtggag
aaggtggaggagaagtcagcaatagatctgacccccattgtggtagaagacaaagaagag
aagaaagaagaagaagagaaaaaagaagtgatgcttcagaatggagagacgcccaaggac
ctgaatgatgagaaacagaagaaaaatatcaaacagcgtttcatgttcaacattgcagat
ggtggttttactgaattgcactccctttggcagaatgaggagcgggcagccacagtcacc
aagaagacttatgagatctggcatcgacggcatgactactggctgctggctggcatcata
aatcatggctatgcccggtggcaggacatccagaatgacccacgctatgccatcctcaat
gaacctttcaagggtgaaatgaatcgtggcaatttcttagaaatcaagaataagtttcta
gcccgaaggttcaagctcttggagcaagccctggtgattgaggaacaactgcgccgggca
gcttatctgaacatgtcagaggacccctctcacccttccatggccctaaatacccgcttt
gctgaggtggagtgtttggcggagagtcatcagcacctgtccaaggagtcgatggcagga
aacaagccagccaatgcagtcctgcacaaagtactgaaacagctggaagaactgctgagt
gacatgaaagctgatgtgactagactcccagctaccattgcccgaattcccccggtcgct
gtgaggctacagatgtctgagcgtaacattctcagccgcctggcaaaccgggcacctgaa
cctactccacagcaggtagcccagcagcagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (15)   
   Pfam (15)   
All databases (70)   

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