KEGG   Loxodonta africana (African savanna elephant): 100673297
Entry
100673297         CDS       T04351                                 
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
lav  Loxodonta africana (African savanna elephant)
Pathway
lav03410  Base excision repair
lav04140  Autophagy - animal
lav04217  Necroptosis
lav04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:lav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100673297 (HMGB1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100673297 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    100673297 (HMGB1)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    100673297 (HMGB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lav03036]
    100673297 (HMGB1)
   03400 DNA repair and recombination proteins [BR:lav03400]
    100673297 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lav04147]
    100673297 (HMGB1)
Chromosome and associated proteins [BR:lav03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    100673297 (HMGB1)
DNA repair and recombination proteins [BR:lav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     100673297 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     100673297 (HMGB1)
Exosome [BR:lav04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   100673297 (HMGB1)
SSDB
Motif
Pfam: HMG_box_2 HMG_box NOA36 HMG_box_5 Nop14
Other DBs
NCBI-GeneID: 100673297
NCBI-ProteinID: XP_003414007
UniProt: G3SLE0
Position
Unknown
AA seq 215 aa
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
NT seq 648 nt   +upstreamnt  +downstreamnt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcgtatgcattttttgtg
caaacttgccgggaggagcacaagaagaagcacccagatgcttcagtcaacttctcagag
ttttccaagaagtgctcagagaggtggaagaccatgtctgctaaagagaaagggaaattt
gaagacatggcaaaggcggacaaggcccgttatgaaagagaaatgaaaacttatatccct
cctaaaggggaaacaaaaaagaagttcaaggatcccaacgcacccaagaggcctccttcg
gcctttttcttgttttgttctgagtatcgcccaaaaatcaaaggcgaacatcctggccta
tccattggtgatgttgcgaagaagcttggagagatgtggaataacactgctgccgatgac
aagcagccttatgagaagaaggccgccaagctgaaggagaaatacgaaaaggatattgct
gcataccgggctaaaggaaagcctgacgcagccaaaaagggagttgtgaaggctgagaaa
agcaagaaaaagaaggaagaggaggaggatgaagaagatgaggaagatgaagaggaggag
gaggatgaagaagatgaagacgaagaagaagatgatgatgatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (57)   

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