KEGG   Loigolactobacillus backii: AYR52_05175
Entry
AYR52_05175       CDS       T04754                                 
Name
(GenBank) RNase J family beta-CASP ribonuclease
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
lbt  Loigolactobacillus backii
Pathway
lbt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lbt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AYR52_05175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbt03019]
    AYR52_05175
Messenger RNA biogenesis [BR:lbt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AYR52_05175
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2
Other DBs
NCBI-ProteinID: ANK60927
Position
complement(1145542..1147203)
AA seq 553 aa
MPLGGVRENGKNMYVVEVDDEIYILDCGLMYPENELLGIDIVIPDFTYLEENIDRVVGVF
LTHGHADAIGALPYFVSKFDVLVFGSELTIALAKLSVNGYTASKKFKDFHVINKDTEIDF
NHATVSFFKTTHSIPDSLGIVLKTDAGQIVYTGDFKFDQSATPEYQTDFARLAEIGQKGV
LALISDSANAESPYTMASERAIAAYILDTFKYHEGRIIVASVASNIARVQQVIDAAYRSG
RKVVLTGRDLEKIVRTAMRLNRLTLPSEDILVATKDLKTLAPEETVILETGKMGEPIKAL
QRMATSRHRLISIKEGDLVFITTTPSHAMETTVAKTKDMIYRAGGEVKAVGDDIHASGHG
NKNDLQLMINLTKPQYFIPVQGEYRLLAAHADIAHETGISYENIFITGKGDVLEYQNKRM
RMANQVEVGNTMIDGIGVGDIGNIVLRDRKVLSEDGIFIAVVTINRKKRMIVSRPKITTR
GFVYVKASRDLMHESADIVTKTVQNNLDNKEFDWGHLKQDIREGLSGYLFEQTKRRPVIL
PVIMEVNQNRRHS
NT seq 1662 nt   +upstreamnt  +downstreamnt
atgccattaggcggcgttcgtgaaaatggaaaaaacatgtacgttgttgaagtggatgat
gaaatttatattttagattgtggtttaatgtacccggaaaatgaattgttaggtattgat
attgtgattcctgatttcacttacttggaggaaaatattgatcgcgttgttggcgtattt
ttaacgcatggtcatgctgatgctattggggccttgccttatttcgttagtaaatttgat
gtcctggtttttggttcagaattgacgattgcactagctaaattaagcgtaaatggttac
acggcatctaaaaagtttaaggattttcacgtcattaataaggacactgagattgatttt
aatcacgcaacagtttccttctttaagacaacccattcaattcccgattcattaggaatt
gttttgaagactgatgctggacaaattgtttataccggtgattttaagtttgatcaatcc
gcaacgccagaataccaaactgattttgcgcgtttagcagaaatcggtcaaaagggtgtc
ttagcgttgattagtgattcggccaatgcagaatcaccgtatacgatggccagtgagcgg
gcaattgctgcctacattttggatacctttaaatatcatgagggccgaattattgttgca
tcggttgcgtcaaatattgcgcgggtgcaacaagttattgatgctgcttatcgttccgga
cgaaaagttgttttaactggccgcgaccttgaaaagattgttcgaacagcaatgcgttta
aatcggctaactttgcctagtgaagatattttagttgcaactaaagatctcaaaacgtta
gcacctgaagagacggttattttagagactggtaagatgggtgaaccgattaaggctttg
cagcggatggcaacaagtcgtcaccgtttgattagcattaaagaaggcgatcttgtcttt
attacgacaacaccatcgcacgctatggaaacaacggttgctaaaacaaaagatatgatc
tatcgagctggtggcgaagttaaggccgttggcgatgatattcatgcttctgggcacggg
aataagaacgatttgcaactgatgattaatttaaccaagccacaatactttattccagtt
cagggggaataccgtttattggctgcacacgctgatattgcacacgaaacgggaatctct
tacgaaaacatctttatcactggtaaaggtgacgttttggagtaccaaaataagcggatg
cgcatggccaaccaggttgaggttggcaataccatgattgatggcattggtgtcggtgat
attggtaatattgtattacgtgatcgaaaagttttatctgaggatggtatttttattgcc
gttgtcacaatcaatcgcaaaaagcggatgatcgtttcacggccaaaaattacgacccgc
ggttttgtttacgttaaggctagtcgtgatttgatgcatgagagtgctgatattgtgacc
aaaacagttcaaaataatttggataataaagaatttgattggggccacttaaaacaagat
attcgtgaaggtttaagtgggtacctatttgagcaaactaaacggcgtccggttatctta
ccagttatcatggaagttaatcagaatcgacggcatagttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

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