KEGG   Loigolactobacillus backii: AYR52_07765
Entry
AYR52_07765       CDS       T04754                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lbt  Loigolactobacillus backii
Pathway
lbt03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lbt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AYR52_07765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lbt03021]
    AYR52_07765
   03400 DNA repair and recombination proteins [BR:lbt03400]
    AYR52_07765
Enzymes [BR:lbt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AYR52_07765
Transcription machinery [BR:lbt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AYR52_07765
DNA repair and recombination proteins [BR:lbt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AYR52_07765
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ANK60162
Position
complement(1648132..1651791)
AA seq 1219 aa
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIESGNTALEKKQLLTESEYREKYEQYGHEFKAKMGAEAIKELLD
DVDLDKEVAGLKEDLKTAQGQKRTRAIRRLDILEAFRQSGNEPSWMVMDAIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRILQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPTLKFYQCGLPRE
MALELFKPFVMHELVKRELASNIKNAKRKIDRRDEDIWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARMLMLAAHHIL
APRDGKPISTPSQDVVLGNYFLTTEEAGINGEGMIFKDPNEVVLAYQNGYVELHTRIGLA
TNSLLDKPFSDKQRNKIMITSVGKVAFNAILPKDFVYLNEPTNGNLMDGIDDKFFIEPGT
DIKAAIKDRDLNQPFKKSFLADIIAQVFKIYKVTETSELLDRMKTLGYTEATHSGITVGV
SDVNDLPEKPALVAEAHKQVALITKQFRRGLITDDERYQRVIGIWNSVKDQIQQRLMENM
PANNPIFMMSDSGARGNASNFTQLAGMRGLMAAPNGQIMELPVISNFREGLSVMEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREEDCGTDRGLEVSAIMEGNEVIEPLY
DRILGRYTMKSIYDPETGEEFAGKNVMIDETLAQKIINAGIKTVTIRSVFTCNTEHGVCR
YCFGRNLAIGETVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVAGGDITQGLPRVQEIM
EARNPKGLATITEVTGEITAIDENPADHTKEITVQGETDTRTYSVPFTSRIRIKEGDLVN
RGDSLTGGSIDPKQLLQVSDTLTTEIYMLREIQKVYRMQGVEVSDKHMEVMVRQMMRKVR
VMDPGDTDILPGTLLDIADFKRANYKTLIAGGIPATARPVLLGITKAALETNSFLSAASF
QETTRVLTDAAIRGKNDPLLGLKENVIIGKIIPAGTGMAKYRHTEPKEVGVVSENVYSIS
DLEKQMNANNGEGQQPDNN
NT seq 3660 nt   +upstreamnt  +downstreamnt
gtgatagatgttaataaatttgagagtatgcagattgggcttgcatctcccgataaaatc
cgcagttggtcttatggtgaagttaaaaagccagaaacaatcaactaccgaacactaaag
ccagaacgcgatggtctgtttgatgaacggatttttggcccgacgaaagactgggaatgt
gcttgtggtaaatacaaacgaattcgctataagggaatcgtttgtgatcgctgcggggtt
gaagttacgcgttctaaggttcgtcgtgaacgaatgggtcacattgaactagcagcgcca
gtttcacatatttggtacttcaaaggtattccaagccgaatgggtcttgttttagacatg
agcccccgcgctttggaagagatcatttacttcgcatcctacgttgtcattgaatccggc
aacactgccttagaaaagaaacaacttttaactgaaagtgaataccgtgaaaagtatgaa
cagtacggtcatgagtttaaagctaagatgggtgctgaagccatcaaagaattattagat
gacgttgacctagataaagaagttgctgggcttaaggaagatctaaagactgctcaaggc
caaaaacggactcgtgctattcgacgtttagatattcttgaagctttccgtcaatctggt
aacgaacctagttggatggttatggatgccattcctgttattccaccggatttacgacca
atggttcaattagaaggtggccgttttgccacttctgatttaaatgatttataccggcgg
gtgatcaaccggaataatcggttgaaacgactacttgatttaaatgcgcctaatatcatt
gttcaaaacgaaaaacggattctccaagaagccgtcgacgctttgatcgataatggccgt
cgtggccgtccagttactgggcctggtaatcgtccgttaaaatcactttcacatttattg
aaggggaaacaaggacgtttccgccagaacttgttaggtaagcgggttgattattcaggt
cgttcagttattgatgtcggcccaacgcttaaattctatcaatgtggtttaccacgtgaa
atggcacttgaattattcaaaccatttgtcatgcatgaattagttaaacgtgaattagcg
tcgaacattaagaatgctaagcgtaaaattgatcgtcgggatgaagatatttgggatgtc
ttggaagatgttattaaagaacacccagtactattaaaccgggcacctacattacatcgt
ttgggtattcaggcatttgaaccagttttagttgatggtaaatcaattcgtctgcaccca
cttgcttgtgaggcctacaacgccgattttgatggtgatcagatggcgattcacgtacca
ttatctgatgaagctcaggctgaagcacggatgttaatgttagctgctcaccatatcttg
gccccacgtgatggtaagccaatttcaacaccttcacaggacgttgtgcttggtaactac
ttcttaacaactgaagaagctggcattaacggtgaaggcatgatctttaaggatcctaat
gaagttgttttggcttatcaaaatggctacgttgaattgcatacgcgtattggtttagca
accaattcattactagacaagcctttctctgataaacaacggaataaaattatgattact
tcagttggtaaggtagcctttaacgcaattttgccaaaggactttgtttatttgaacgaa
ccaactaacggtaacttgatggatggaattgacgataagttctttattgaacctggtact
gatatcaaggctgccattaaagatcgtgatttgaaccagcccttcaagaagagcttcttg
gccgacatcattgcacaagtctttaagatctataaggtaaccgaaacatctgagttattg
gatcgaatgaagactttaggttatacggaagcgacgcattcagggattaccgttggggtt
tctgatgtcaatgacttgcctgaaaagcctgccttagttgcagaagcacataagcaagtt
gctttgattacgaaacagttccgtcgtggtttaattactgatgatgaacgttatcaacgt
gtcattggtatttggaacagcgttaaggatcaaatccaacaacggttaatggaaaatatg
cctgcaaacaatccaatctttatgatgagtgattctggtgcccgtggtaatgcatctaac
tttacacagttagctggtatgcgtggtttaatggctgctcctaatggacaaatcatggaa
ttaccagttatttcaaacttccgtgagggtctctccgttatggaaatgtttatttcaacc
catggtgctcgtaaagggatgaccgatacagcactgaagaccgctaactccggttactta
actcgtcgtttagtcgatgttgcccaggatgttatcgttcgtgaagaagattgtggaact
gatcgtggcttagaagtatctgccattatggaaggtaacgaagtcatcgaaccactttat
gatcgaattcttggtcgttacacgatgaaatcaatttatgaccctgaaaccggtgaagaa
tttgccggtaagaacgttatgattgatgaaacgttggcgcaaaagattattaatgccgga
attaagaccgtcacaattcgttccgtctttacttgtaacactgaacatggtgtttgccgt
tattgcttcggtcgtaacttggccattggtgaaaccgtcgaagttggtgaagccgttggg
acagttgctgcgcagtcaatcggtgaacctggtacacagttaacaatgcggactttccat
accggtggtgttgccggtggcgatattacgcaagggttgcctcgtgttcaggaaattatg
gaagcacgtaatcctaaaggccttgcaacgattactgaagttactggtgaaattacagcg
attgatgaaaatccagctgaccacactaaggaaattacggttcaaggcgaaactgataca
cgaacttatagtgtaccgtttacgtcacgaatccgaattaaggaaggcgaccttgttaat
cgtggtgattcactaactggtgggtcaattgatcctaaacaactattacaagtcagtgat
accttaacaactgaaatctatatgcttcgcgaaattcaaaaagtataccggatgcaaggt
gttgaagtttctgataagcatatggaagttatggttcggcaaatgatgcgcaaagttcgt
gttatggatcctggcgatacggatatcttgccaggaacattacttgatattgccgacttt
aagcgagcaaactataagaccttaattgctggcggtattccagcaacagcacgtcctgtc
ttacttgggattactaaggctgctctagaaactaatagtttcttatctgcagcttcattc
caagaaacaactcgtgtcttgactgacgccgcaattcggggcaagaatgatccattactt
ggtctaaaagaaaatgttattatcgggaagattattcctgctggtactggtatggctaag
tatcgtcatactgaaccaaaagaagttggtgttgtttccgagaacgtctattcaattagt
gatcttgaaaaacaaatgaacgccaataatggtgaaggtcaacaaccagataataattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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