KEGG   Leishmania braziliensis: LBRM_28_0340
Entry
LBRM_28_0340      CDS       T01113                                 
Name
(RefSeq) putative rrp44p homologue
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
lbz  Leishmania braziliensis
Pathway
lbz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lbz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LBRM_28_0340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lbz03019]
    LBRM_28_0340
Messenger RNA biogenesis [BR:lbz03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     LBRM_28_0340
SSDB
Motif
Pfam: RNB OB_Dis3 Rrp44_CSD1 CSD2 Rrp44_S1 PIN_4 Dis3l2_C_term DUF3695 Toxin_R_bind_C SMBP
Other DBs
NCBI-GeneID: 5416940
NCBI-ProteinID: XP_001566068
UniProt: A4HG74 A0A3P3ZAS4
Position
28:107495..110257
AA seq 920 aa
MNAMEDRRVQNIILLTTVMSEVQNRNKAMYARLQLLLGDKKKQCFVFANDRHEQTHCMRK
EGESPNDFNDRAIRVAAQWYARHVVAAFPGTADLSTSGVIVVSHDQAFKQAMNASEEAQR
VSNLRCVSLRDYIKLNVASDSDLLEKIQSEEPEGMKESPSTRQLFTPYLSMTALNAGVQD
GSLYKGKLRVSETSCFFGEIRGKFERHNFQRILIQGRANMNRAIHDDIVAVQLLPVSSWR
GPKGSAPLSESVSEDDAIAARFSPAGKVVGLLSSNRRPFCGSLDETELERVKANKSGNVS
ILFQPKNNRIPRIRISTRHVQDLMDKRLSVVIDDWPLYSSFPVGHYVEVLGKIGDRDTEA
TVILLENDVPHYDFSEAVHDCLPKGQWAVTKDEEAKRLDLRDLCIVSVDPLGCRDIDDAL
HCRAVNGNHLEVGVHIADVTHFLPGGTAMDEEAAKRSTSVYLVDRRINMLPQLLTENLCS
LVEAEDRYAFSILWEFDENLNVVRDWFGKTIIRSRGALYYGDAQRMIDNPADTSDIAVSL
RELMRLSKHFKAQREKDGALFLASQEFKFKVDNEHVNPTDMQMYQTFEANSMIEEWMLYA
NAAVATKVYESYPQWALLRRHERPAEGAFDTLNDALFGKLHVRLDDTTSLTLNTSLDKCE
DPRDPYFNRLIRILTTRCLRQAQYFSSGGIPKDEFCHFGLAMPIYTHFTSPIRRYADVIV
HRQLAAAIGVASVSEEQMNAGRMKTIAENLNYRHEQAQRAGRDSQNLFTGFYLRNFEDGK
IPDEEGYVVRVSETHVFVLVPKYGQESRIPREQLQTVPGLLDKVKVGIQLKRQGDVMRTK
LVFRLIGMMRDGEEGGVLVADDEAYDIIEDGEEAAEDAQKAARGTSRACVAAGGSGIEAL
EPALKRAKAEGVETALPTSL
NT seq 2763 nt   +upstreamnt  +downstreamnt
atgaacgccatggaggatcgtcgcgtgcagaacattattctcctcactaccgtcatgagc
gaggtgcagaaccgcaacaaagccatgtatgcgcggctgcaactcctcctcggggataag
aagaagcagtgcttcgtcttcgcgaacgaccggcatgagcagacgcactgcatgcgcaag
gagggggagtcacccaacgacttcaacgatcgcgcgattcgagtggcggcgcagtggtac
gcgcggcacgtggtagccgccttcccgggcacagcggacttatcgacgtccggcgtgatt
gtcgtctcgcacgatcaggccttcaagcaggccatgaacgcgtcggaggaggcgcagagg
gtgagcaacctgcgctgcgtatcgctgcgtgactacataaagctgaacgttgccagcgac
tcggacttgctggagaagattcagtccgaggagccggaagggatgaaagagtcgccgtcg
acgcggcagctcttcacgccgtacctcagcatgaccgccctgaacgccggtgtgcaagac
gggagtctgtacaaaggaaagctgcgcgtcagtgagacaagctgcttctttggcgagata
cgcggcaagtttgagcgccacaacttccagcggattctcatacagggccgtgccaatatg
aaccgcgcgattcatgacgacatcgtggcagtgcagctactgcccgtgtcgagctggcgt
ggccccaaaggctcagcgcccttatcagagtctgtgagcgaagatgatgccatcgcagcc
cgcttcagtcctgccggcaaggtggtgggcctactctcctctaaccgccggccgttctgc
ggcagcctcgatgagactgagctcgagcgggtcaaggcgaacaagtctggtaatgtctcc
atcctgtttcagcccaagaataaccgaatcccgcgcattcgtatcagcacccgccatgtg
caggacttgatggacaagcgtcttagcgttgtgattgacgactggcccttgtacagcagc
tttccagttgggcactacgtcgaggtcctcgggaagatcggcgatcgcgacacggaggcg
acagtgattctcttggagaatgatgtcccgcactacgacttcagcgaggctgtccacgac
tgcctcccaaaggggcagtgggctgtgaccaaggacgaggaggcgaagcggctggacttg
cgcgacttgtgcattgtgagcgtcgacccgctgggctgccgcgatattgatgatgcgctg
cactgccgtgccgtgaatggcaaccacctcgaggtgggtgtgcacattgcggatgtcacg
cactttctgcccgggggcacggccatggacgaggaggccgcaaagcgcagcacgagcgtg
tacttggtggaccggcgcatcaacatgctgccacagctgctgacggagaacctctgctcg
ctagtggaggctgaggaccgctacgccttttcgattctctgggaattcgatgagaacctg
aacgtggtgcgcgattggtttggcaagacaatcatccgctcacgcggtgccctctactac
ggcgatgctcagcgcatgatcgacaatccggctgacacctccgatattgccgtctcgctg
cgcgagctgatgcggctcagcaagcacttcaaggcgcagcgcgagaaggatggcgccctc
tttctggcgtcgcaggagttcaagttcaaggtggacaacgagcatgtcaatccaaccgac
atgcagatgtaccaaaccttcgaggcgaactcgatgatcgaagaatggatgctgtacgcc
aacgcggcggtagcgacgaaggtgtatgagtcctacccccagtgggcactgctgcgccgc
cacgagcgacctgctgaaggcgcgttcgacacgctgaatgacgctttgttcggcaaactg
cacgtacgcctcgacgacactacctcactgacgctaaacacgtccctcgacaagtgcgag
gacccacgggacccatacttcaacagactcattcgaatcctaacaacacgatgtctgcga
caggcgcagtacttctccagcggtggcatccccaaggacgagttttgccactttggactt
gccatgcccatctacacccacttcacgtccccaatccgccgctacgccgatgtcatcgtc
catcgccagctggcggccgctatcggcgtcgccagcgtgagtgaggagcaaatgaacgcg
gggcggatgaagactatcgcagaaaacctcaactaccgccacgagcaggcgcagcgagcg
ggccgggactcgcagaacctcttcaccgggttctacctgcgcaacttcgaggatgggaag
atccctgatgaggaaggctatgtcgtgcgcgtgtcagagacgcatgtatttgtgcttgtt
cctaagtacggccaggagagccgcatcccgcgggagcagctgcaaacagtgccgggcttg
ctggataaagtgaaagtgggcatccagctcaagcggcagggcgatgtcatgcgcacgaaa
ctcgtattccgcctgattggcatgatgcgcgacggcgaggaaggcggggtgctggtggca
gacgacgaggcgtacgacatcattgaggatggcgaggaggccgccgaggatgcacagaag
gcggcgcgaggtacgtcaagggcatgtgtagcagcgggtggcagcggcattgaggcattg
gagccggctcttaaacgggctaaagctgagggagtcgagactgccctgccgacatcgctg
tag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (22)   

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