KEGG   Lacticaseibacillus paracasei LC2W: LC2W_2696
Entry
LC2W_2696         CDS       T01956                                 
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
lce  Lacticaseibacillus paracasei LC2W
Pathway
lce03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lce00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LC2W_2696 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lce03400]
    LC2W_2696 (mfd)
Enzymes [BR:lce01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LC2W_2696 (mfd)
DNA repair and recombination proteins [BR:lce03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      LC2W_2696 (mfd)
SSDB
Motif
Pfam: UvrB_inter DEAD TRCF CarD_TRCF_RID Helicase_C ResIII MFD_D3 UB2H RecG_dom3_C
Other DBs
NCBI-ProteinID: AEA55026
UniProt: K0MXW9
Position
complement(2622547..2626071)
AA seq 1174 aa
MNLIDMVQADPALSALWPKLKTGRHLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHA
DELAADLSSLLGDAVVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGKPGIIVTSLA
GYKRLLPSPADWTASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDV
YPLNQDDPIRIELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERI
TKQANAYKAKVKNAAAKQAVTDGLLTTGQQLSAHERPENLALYAAELYPEQQRISDYLQP
DALVAFDDYSRLLDSDTTLVQDTAEWYSQLQEEGRLLPNTPNLTIQELAQQDKRPRLYLS
LFQKGMGQLRLDSLTNIPSRNVQQFFSQMPLLKTETDRWVKQQQTVVFLITDKNRLEKLS
ETLSDFEISNVMTAPTKLLPSQVQLTEGSLKNGFELPDLKLVVVTEHELFNARQRRHARH
QTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIP
VDQLNLVQKYVSADGKTPSVNKLGGAEWQKTKRKVAARIEDIADELIDLYAKREAEKGFA
FGPDDDLQHKFEAEFPYPETPDQLRSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAA
FKAIDYGKQAAILVPTTILAQQHFDTMKERFADFPIKVGLLSRFQTAHQNKETIKGLKNG
TIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRT
LNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDM
ERTVSQLEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANT
LIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKNFTELGSG
FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRGIKSAEKTDAEIDLG
LEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLK
RFADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALSATTLKAQVAITDGKLTVTLA
LPKDMKTATWLDQLTGFLQGLLTVVNPQPEKKSA
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgaatttgatcgacatggtgcaggcagatccagcattgtcggcattatggccgaagctg
aaaacgggtcgccatttggtgacgggactgtcgggctcagccaagacggtcttttttggc
gcactattgcaacagcgaccgcagcagattctaattgttgaaaacaatcgctttcatgcc
gatgaattagctgctgatttaagcagtttgctcggagatgcagtggtttacgattttcca
gttgaggatgtgttggcagctgaagtcgcggttagttcgccagagacgcgtaacgatcgt
attaatgctttgacgtttattcaaagcggcaaacctgggatcatcgtaaccagtctggcc
ggttataagcggcttttgccgtcaccagccgattggacagctagtgaattggccattgat
atgacttccgagcttgatccgcaaaccgttgccaaacagctggtcgccatgggctatcga
cgtgattcgttagtcagcgcgccgggacagtttgccattcgcggcggcatcattgacgtc
tatccgttgaatcaagacgatccgattcgaattgaattgttcgatactgaaatcgattcc
atccgcagctttgacattgccacccaacgtagtctgcaaaaacttcagcagatcacgatt
gcgccggcaaccgacatggtggcgactgatcaggttttggccgctgctggcgagcgcatt
accaagcaagctaatgcctacaaggcaaaagtgaaaaatgccgccgctaagcaggccgtt
acagatggtttattgacgactggccagcagctatcggcacacgagcgtcctgaaaatcta
gctttatatgcggccgaactatacccagagcagcaacgcatcagtgactatttgcaacca
gatgcactggtagcattcgatgattacagtcgtttgctagatagcgatacaaccttggtg
caggatacggcagaatggtactcacagttgcaagaagaaggccgtctgctacctaacacg
ccgaacctgacgattcaggaacttgcacagcaagataagcgcccgcggctttaccttagc
ctttttcaaaaaggcatggggcagttgcgacttgacagcttgaccaatattcccagccgt
aacgtgcagcaatttttcagtcagatgccgttactcaaaacagaaaccgatcgctgggta
aagcagcagcaaaccgtggtgttcttgatcacagataaaaatcggctggaaaagctgagc
gaaacgttgtcagattttgagattagcaatgtcatgacagccccgactaagctgttgcca
agccaggtgcaattgacagaaggcagcctgaaaaatggcttcgagctgcccgacttgaaa
ttagtcgttgtgaccgagcacgagttattcaatgctcgccaacgtcgtcacgcacggcac
caaacactggcgaatacagagcgattgcgaagctataacgaactcaagcctggtgactac
gtggtgcatgttaatcacgggatcggtcaatacaccgggatggagacattagaagttgac
ggtgtgcatcgtgattacattacgattgtttaccgcaacaacgataagctgtttattcca
gttgaccaactgaatctagtccaaaaatacgtttccgcagatggcaaaacgccaagcgtc
aataaacttggtggtgctgagtggcagaaaactaaacgcaaagtagctgcccgaattgaa
gatatcgctgacgaattaattgatttatatgccaagcgtgaagcggaaaaagggtttgca
tttgggccggatgatgacctgcagcacaagttcgaagcggagttcccttatcctgagaca
ccggaccagttgcggtcagctaaagaaattaagcatgatatggaaaagccgaagccaatg
gatcgcttattggttggcgatgttgggtttggcaaaaccgaagttgcgttgcgtgctgcc
ttcaaggcaatcgattatggcaaacaggcagccattttggtgccgacaacgattttagcc
cagcaacactttgacacgatgaaagaacggtttgcggactttccaatcaaagtcgggttg
ttgtcacggttccagacagcgcatcagaacaaggaaacgattaaggggcttaagaacggc
accattgatattgtcgttggcacccatcggctgttgtctaaagatgtcgcttttcgggat
ttgggattgctggtcattgatgaggaacagcgctttggcgttaagcataaggaacggatc
aaacaactcaagagtaatgtcgatgtgctcacgctgacggcgactccgattccaagaacg
ttgaacatgtccatgctaggcgtgcgtgatttgagtgtcattgaaacgccgccaacgaat
cgctatccgattcaaacctttgtcatggagcaaaatccaggcgtgattcgcgaagccatt
gaacgggaaatggaacgtggcggtcaagtcttttacctgcataaccgggtggaagatatg
gaacgtaccgtgagtcaactggaggaactggtgccagatgcaagtgtcggatatgcgcat
ggtcagatgactgagacgcagttggagaacgtcatttatgactttttgcacggtgcttac
gatgtgctggtgaccacaaccattattgaaactggcgtggacatgcccaatgccaatact
ttaatcatcgagaatgccgatcattacggtctgtcacaactttatcaattgcgcggccga
attgggcggtcaagtcgagtcgcttatgcgtactttatgtatcagccgatgaaggtgctc
aatgaggttgctgaaaagcggcttcaggcgattaaaaatttcacggaattgggtagcggc
ttcaaaattgcgatgcgtgatctatcgattcgcggagctggtaacctacttggcaagcag
caacatggcttcatcgattcggtgggctatgatctttacacccagatgctgcaagaagct
gttaataaacggcgcggtattaaatcggctgagaaaacggatgctgaaattgatctgggt
ctggaagcatacctgccaactgattatgtggccgattcccgtcagaagatcgagttgtat
aaacgcattcgagaagcagatagcgatgaagccgaaactgagatcagcgaagatctgatt
gatcgttttggtgactatccgcaaccggtgaccaatttattggcgattgcgcatctcaag
cggtttgctgacttggcttgggtcaatcacgtaacgaaggcggggcaaaaattgacggtt
gtgttgtcaccgcaagcaactgctaaagcacaaggcgagccgattttcaaagcgttaagt
gcgacaacattgaaagcgcaggtcgcgatcacggatggcaagctgacagttacgttagca
ttgccaaaagatatgaagactgcgacttggcttgatcaattgaccggctttttgcaggga
ttactgactgttgtcaatccgcaaccggaaaagaaatcggcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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