KEGG   Lates calcarifer (barramundi perch): 108874587
Entry
108874587         CDS       T04895                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03013  Nucleocytoplasmic transport
lcf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108874587
  09122 Translation
   03013 Nucleocytoplasmic transport
    108874587
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108874587
   03041 Spliceosome [BR:lcf03041]
    108874587
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     108874587
Spliceosome [BR:lcf03041]
 Complex C
  Other components
   EJC/TREX
    108874587
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108874587
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 eIF2A RMC1_N NBCH_WD40 PD40 Coatomer_WDAD Nup160 Peptidase_S9_N Cytochrom_D1 DPPIV_N MIOS_WD40 PROPPIN IKI3 YNCE
Other DBs
NCBI-GeneID: 108874587
NCBI-ProteinID: XP_018518614
Position
LG8:25702369..25705998
AA seq 322 aa
MASQYYQDMQESFKNNSKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFILEKDRL
VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAFACDDK
EGKYDNNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtcgcagtactaccaagacatgcaggagagcttcaaaaataacagcaagagccga
gagttcccggctcacaccgctaaagtccactcggtggcctggagctgcgacggcaggaga
ctcgcctccggatcttttgacaaaaccgccagcgttttcatcctggagaaagaccggctg
gtgaaagaaaacaactacagaggtcatggagacagcgtggatcagctctgctggcaccca
accaacccagacctgtttgtcacagcatctggagacaagaccattcgcatatgggacgtc
cgcaccaccaagtgcatcgccaccgtcaatacaaaaggagaaaacatcaacatctgctgg
agtcctgatggtcagaccatcgctgtcggcaacaaagacgacgttgtgaccttcatcgac
gccaagactcatcgctccaaggccgaggaacagttcaagttcgaggtgaatgagatctcc
tggaacaacgacaacgacatgttcttcctcacaaacggcaacggctgcatcaacattctg
agttatccagagctgaagcccattcagtccatcaacgctcacccgtccaactgcatctgc
atcaagttcgaccccacgggaaaatactttgccacaggaagtgccgacgccctcgtcagc
ctgtgggacgtggaggagctggtgtgtgttcgctgcttctccaggttagactggccggtg
aggactctgagtttcagccacgatgggaagatgttggcctcagcctcagaggatcatttc
atcgacatcgctgaggtggagacaggagagaagctgtgggaggtgcagtgtgactctcca
accttcactgtcgcctggcacccgaagaggccgctgctcgccttcgcctgcgacgacaag
gagggcaagtacgacaacaaccgggaggcgggcaccgtcaaactgttcggcctccccaac
gactcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (15)   
   Pfam (15)   
All databases (43)   

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