KEGG   Lates calcarifer (barramundi perch): 108877670
Entry
108877670         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03440  Homologous recombination
lcf03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    108877670
   03460 Fanconi anemia pathway
    108877670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lcf03032]
    108877670
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108877670
Enzymes [BR:lcf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     108877670
DNA replication proteins [BR:lcf03032]
 Eukaryotic type
  DNA Topoisomerases
   108877670
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     108877670
   FA (Fanconi anemia) pathway
     108877670
SSDB
Motif
Pfam: Topoisom_bac zf-GRF Toprim zf-C4_Topoisom zf-C2H2_10
Other DBs
NCBI-GeneID: 108877670
NCBI-ProteinID: XP_018523295
Position
LG11:16524078..16538234
AA seq 1048 aa
MLIVHLLGRSLLRPALQRLGVQQRCLCAVQSVRCPDTPQEADMIRSRAQIKRVLCVAEKN
DAAKGISEIMSSGRARRREGLSKFNKIYEYEYHLFGQNVTVTMTSVSGHLLGLEFKAPFQ
KWHSCNPVLLFDAEVEKYCPDNMIQIKRTLEKEARQCQALIIWTDCDREGENIGFEIIDV
CKAVKPNLQLFRAKFSEITPNSIRRACETLTEPDANISDAVDVRQELDLRIGASFTRFQT
LRLQKIFPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHEVEEDSVEF
SWKRNRLFNHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLRIS
AKETMKIAEKLYTQGFISYPRTETNIFPATLALGPLVEQQTQSPVWGTFAQQVLDQPGGP
NPRQGKNSDQAHPPIHPTKYTSTLQGNEGRVYEFIVRHFLACISQDAQGQETVVDIDIAQ
EKFSTSGLMIIARNYLDVYPYDKWSAKVIPVYEQGSQFQPSAIEMVDGQTSPPQLLTEAD
LISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKP
NLRAELEADLKLVSQGRKDKQSVLLHHIQKYKTVFIESVRKAKKLDEALSPYLGAAQEIT
ETEQQDIEIPLPVRKCPNCGRDMVLKKKREGNSKYLSCMGFPACKTAVWFPDTVLEVSRD
DSICPTCQPHPCFRLNFKFRRGSLPPMMPLEFVGCIGGCDDTLREVLDLKYLRAGGGGGG
GGGVGEGGGRGRGGGGRGDDPWPPDARPPRPQLPRAPRSNPHPSLPPVPSWTPQPRPPAG
GGVSSADPSRDAIVCNCGQDALLLTVRKNGPNQGRQFYKCNSGSCNFFLWADQPDQEGAP
QSQGPPRPLPAPRTSQPPPRPSLGFTNPSGGSRGQEGSAGGQVGHTMCNCNEAAVTRTVQ
KDGPNKGRMFQTCGKPREQQCGFFQWADENVPPAGGFGGGFNGGGDGGKRGRKIMGDTNP
NKPPAAKKPRTCGICHMPGHTRITCPQR
NT seq 3147 nt   +upstreamnt  +downstreamnt
atgctaatagtgcacctcctcgggagatccttgcttcgaccggcactacagcgactcggg
gtccagcagaggtgtctctgtgcggtgcagagtgtccggtgtccggacacaccgcaggag
gcagacatgatccggagccgggctcagatcaagcgggtcctctgcgtagccgagaagaac
gatgcagccaaaggcatctcagagatcatgtccagcggcagggccaggaggagggaaggg
ctgtcaaagtttaataaaatctatgagtatgaatatcatctctttggtcagaatgtgaca
gtaacaatgacatctgtatcaggccatttactgggtctggagtttaaagcaccgtttcag
aaatggcacagttgcaatcctgtgctgttatttgatgcagaggtggagaagtattgtcca
gataacatgatacagatcaagaggacactagagaaagaggcgaggcagtgccaggcctta
atcatctggactgattgtgaccgagagggagaaaacattggctttgaaatcatagatgtc
tgcaaagcagttaagcccaatttacaactctttcgggcaaagttttctgaaataaccccc
aactccattcggagagcttgtgagactctaacggagccggatgccaacatcagtgatgct
gtcgatgtccgtcaggagctggacctgcggataggtgcatccttcactcgattccagacg
cttcgcctgcagaagatctttccggagtctctggccaatcagctgatctcatacggcagc
tgtcagtttcccactctgggttttgtggtggagcgcttcaaagccatccaggctttcata
cctgagactttctacaagatcaaagtgctccatgaggtcgaagaggactctgtagagttc
agctggaaaagaaatcgactgttcaaccacacagcttgcctggtgctctaccagatctgc
atggaggatcccatagcaacagtcacctcagtaaccagcaaacccaagagcaagtggaga
ccgctgcctttggacactgtggaactggagaaactggcatctcggaagctcagaataagt
gccaaagagaccatgaaaattgcagaaaaactctacacccaagggtttatcagctacccc
cgcacagaaactaacatttttccggcaaccctggctcttggccccctggtggagcagcag
actcaaagcccagtctgggggacattcgcccagcaggtacttgaccagcctggaggtccc
aatccacggcagggcaagaactctgaccaagcccatcctcccatacaccccaccaagtac
accagtacgctgcagggtaatgaagggcgtgtgtacgagttcattgtcaggcacttcctg
gcctgcatatcccaggatgctcaggggcaggagacggtggtggacatagacatagcccag
gagaagttctccacctcaggacttatgatcattgcgaggaactacctagatgtttacccg
tatgacaagtggagtgccaaggtgattccagtgtacgagcagggctcccagtttcagccc
tctgctattgagatggtggatggacagacgagtcctccacagctgctcactgaagccgac
ctcatatcactgatggagaaacatggcattggcacagatgcgacccatgcagagcacatt
gagactataaagagtcgcatgtacgtgggcttgacagctgaccagaggtttctcccaggg
gagcttggcatggggctggtggagggttacaactccatggggtatgaaatgtccaaacca
aacctgcgcgctgaattagaggcagatctcaagctggtatcacagggcaggaaggacaaa
cagagcgtgctgctgcaccacatccagaaatacaagaccgtcttcatcgagtctgtcagg
aaggcaaagaagttagacgaagccctgtcgccatatctgggtgcagcccaggagatcact
gaaacagagcagcaggacatagagatcccgctgccggtcaggaagtgccctaactgtggt
cgggacatggtgctgaagaagaagagggagggaaacagtaagtacctgtcctgtatgggt
ttcccggcctgtaagacagcagtgtggttccctgacacagtgctggaggtcagcagagat
gacagcatctgtcccacctgtcagccacatccctgcttcaggttgaacttcaagttccgc
aggggcagcctccctcccatgatgcctctggaatttgttggctgcattggtggatgcgac
gataccctcagagaggtgctggacctgaaatatctcagagcaggaggaggaggcggaggt
ggtggaggagtgggagaaggtgggggaagaggaagaggagggggaggaagaggagatgac
ccttggccaccagatgcaaggccccccagaccacaactgcccagagccccacgttctaat
cctcacccctcccttccccccgtcccctcctggaccccacagcctcgacctccagccggc
ggtggtgttagcagtgcagaccccagcagagatgccatcgtgtgtaactgtggtcaggac
gcacttctcctcactgtgcgcaaaaacggtcccaaccaggggcgtcagttctacaagtgc
aacagcgggagctgcaacttctttctgtgggcagatcagccagaccaggagggggcgccg
cagagtcaggggcctccacgtccactcccagcaccaaggacctcccagcctcctccaaga
ccctctttggggttcacgaacccatctggagggagcagagggcaggaagggagcgcagga
ggacaagtgggtcacacaatgtgtaactgtaatgaggcagcagtgacgcgcacggtgcag
aaggacggcccaaacaagggccggatgttccaaacctgcgggaaaccaagagagcagcag
tgtggcttcttccaatgggctgatgagaacgtacctccagcaggtggttttgggggtgga
tttaatggcggtggagacggagggaagagggggaggaagataatgggagataccaaccct
aacaaacctcccgctgctaagaaaccccgtacctgcggcatctgtcacatgccagggcac
acccgaatcacctgtccccagcggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (60)   

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