KEGG   Lates calcarifer (barramundi perch): 108884494
Entry
108884494         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoprotein TPR-like
  KO
K09291  nucleoprotein TPR
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108884494
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108884494
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     108884494
SSDB
Motif
Pfam: TPR_MLP1_2 GAS
Other DBs
NCBI-GeneID: 108884494
NCBI-ProteinID: XP_050926140
Position
LG4:complement(22716719..22744842)
AA seq 2526 aa
MAAVLLQVLERTELNKLPKGAQNKLEKFVTELQNANEALRTQHERFKADSEQQYFDIEKR
LTESQEQILSATRDLQTLKEENKKLNEELNTLKGIEGDTFQDKTPQQQTKAKYEIEAERR
ELARLLEKRTQEVENLTEDVNRLNEKLTETNKCKMELQLKLDDIQSSETSVQHREKRMEQ
EKELLEKKIEWLTAELKTKTDELLSTNRDKGKEILELQGSLKNSKEQVTRLESQLTSLKE
TNENQSKRADDLNSKLKQVKDERSAMEEKYRNEINAHVKLSSLYKGAATDMETKNQELSR
AVEELSKLVKDTGEANKALEKKVSEGEELKMKLEAELREKIKKMEKELENATMKAAGKHC
CVPSLTEEQLDSMCPSAAAIAAIVKPGMKFFDLYNAYAECQTQLQLEKQESRRVSRVLDE
IVQEVESKAPVLKRQREEYESMQRSMASLCNKLEQARMEIYSLQKEKEDTKQRCDALERD
KVKTERQLEDTSAQVCALLVELEEARGNQVTKDDDSSAAISSTSEVISPRQLSFRSVEEL
QRQNQSLLGRLRELEQEKDRQQSHVTSARVSELEASVDKLQKEVEQLREQRNQQKQLADS
SARQRDMYKALLTHSTGFSLPPPGLESSSHPTHVRPSVPGTRSTPQRAAAAESAQTAQAK
AALKQLNDAFTMYKKEKAENDRMLNETNDRLQRQLSELNSSHAKLTSQLEFSNKRYEILQ
ETVSAYRREISALQDRNQKMAATAQRHEHIIHTMSQDLRQANEKLALEEVRVENLTKERD
MLRQAESRLTREKEAILAEQRNQNLLLTNLKTIQLTMERTETEARQRLNNKIEHLEAELA
SMKTRMDQEVAQRHALGRTMDAQLLEAKKQLETQNILQQKTRELLRSSEQQVAALKAQLA
SASSSEAVTSSSNTSTPATRAAGLRAPLRVRSPGPAASQQPSQSEQELTEVKGQLRTAEE
QNSELAEQLKNANATVEQYRAVVLTLEDSLKKEKESRSPLEIRLKESEEVQKQLEKRILE
VEKTKQLEQEERRKALDAVEKQVCELQRSLKASQTEQQEALERAAASATLEQKAIQDSLL
QTKLAGEAQAKYERELMLHAADVEALQELKKRIQQEATQKRELEEQLNKTSCLLQEKTAT
WNTLERQLKEDLSNHSRRCEELGKQNALLHQQMDEMATRSRQQQQQQQLDLSFSEEGKTT
EQILEILRFVRQEKQIAVARCEVSEGEALRYKQRVEHQDRELKELQEALNAEREKMQATA
KTLSQQEEQLKKMDSISALQQTNRMLKMDRDKLEQELQQAQAKVTKLQSDISPLHHSLSQ
LSEKNGALQADKRILEEDLRRWKAKAQQLVNQQKDGDVEDRQKLTAEREAQQRRITQLAE
ETAKLKTELARSSASSNSTQSQLQALRDSVARLTSERDSLKKELETKNNDILEKNKTITQ
VKKIGRRYKTQYEELKAQHDKLVAETAAKAGSEAAPSQEVQQELTKAQEELNKAREELKA
LKEEVQKKQEETQKAQQDLDEAQKETQKTKEKFQEVQNQLTQNQNQLTQVQSQLSQTQTQ
LQQNQNQLTQSQKDLQQAKAHTQQVQNQLKSAQSQAQARQNQIQQIQRELQQAKEALQQN
LASQKELQQTHQTSQHSHNQEVSNLKTALSQAEAKVMELQGQLDSLQKTVGEQEADIKRL
QEQLTEANQANEANRATQAKNSQSIQASDANTASDANQALQEELTKLRQELFESKNREEQ
LKQQMADKEEKTKKAFLGAKTKINQLNTAKEQLSEEIEELKQNKEELEVRMNALKSQYEG
RLLRLDRELRELRETQTHSDPREEPQDQSGAKVGDQPRTADQRQISLKSPAQDRGSSSLS
EPPTANIRPTPSTPSPSNKPSPSPGSKATPRASIRPMVTPATVPIPTPTATVMPTTQTDS
QEVLMGAGASVHSTSSGLVSAPTSITQPTSTQATAFVQPTQQQAASQDAGSSMEAERPST
SSSLIGPAGSKRAREEEVEEEEEESRPESSHTPPTTKKLRLKPSIALQMEGDEEMEGELG
DEGERQDSPDDSQEIPGEAFPVLAEDDEDLEEEGVSQSVPSYQMSSQGSTIIRDVIVIDT
DSESRESKEGEEKQEDEGEEEEEEEEIEEYKEEEEEDEDDDDAGGSGMRGGEESNEKSRD
AEDDGEEEDPSEASNTEETVCGASSDSQHPSEQPHSSEGSSSATSESDPTRDPVHLPPTA
SCSAPSPSSSLTPRLPHPRRPTHSLPPRLYIQPPAPELGPPHTQRQSSQLRRPSVGRGLQ
LTPGIGSTQHFFDDDDRMVPSTPTLVVPHRTDGFAEAIHSPQVAGLSTRFRFGPPEDLLP
QTSASHSDLGQLASQGGLGMYESPLFLAAHDEDGGGRSVPTTPLQVAAPVTVFTESLPSD
TADNMASQSVPMVTASTGIATAADDGDEVFVEQEGEGPGIESSLESQTDMESAGQQSDDA
SLPSTSQDPDTSSVTQRRPVTSQSLISSLSGRGVRGGRGEARLSLTRRGTFSRGGRGGGM
GRGGIA
NT seq 7581 nt   +upstreamnt  +downstreamnt
atggcggccgtcctgctgcaggtgctggagcggacggagctgaacaaactcccgaaaggt
gcccagaacaagctagagaagtttgtaacggagctgcagaatgctaacgaggcgctgagg
acgcagcacgagcgcttcaaagcggacagtgagcagcagtactttgacattgagaagaga
ctgacggagagtcaggaacagatcctgtctgccaccagagacctgcagaccctgaaggag
gaaaataaaaaactcaatgaagagctgaacactctgaagggaatagagggagacacgttt
caagataaaacacctcaacagcaaacaaaggccaagtatgagattgaggcagagaggaga
gagctggcgaggctgctggagaagagaacacaggaggtggagaacctcacagaggatgtg
aaccgtctaaacgagaagctgaccgagacaaacaaatgcaagatggagctgcagttgaaa
ctggatgatatccagtcatctgagacttctgtacagcaccgggagaagcgtatggagcag
gagaaggagttactggagaagaagatcgagtggttaactgcagagctgaagaccaaaact
gatgaactgctcagcaccaacagagacaaaggcaaagagatactagagctgcagggtagc
ctgaagaacagcaaggagcaggtgaccaggctggagagccagctcacctctctgaaggaa
accaatgagaaccagagtaaaagagctgatgacctgaacagcaaactgaaacaggtgaaa
gacgagcgcagtgccatggaggagaaatatcgcaatgagatcaacgctcacgtcaagttg
tcttcactctacaagggggcagcaacagacatggagaccaagaaccaagaactgagcaga
gcagtggaggagctcagcaaactggttaaagacactggggaagccaataaggctctagag
aagaaggtgtctgagggagaagaactgaagatgaagcttgaggctgagctgagagagaaa
atcaagaagatggagaaagagctggagaatgctacaatgaaggctgccggcaaacactgc
tgtgtgccgtctctgactgaggagcagctggactccatgtgtccatcagcagctgccatc
gctgccatcgtaaagcctggcatgaagttctttgatctgtataatgcgtatgctgagtgt
cagacacagctgcagcttgagaagcaggagagcaggagagtgagcagagtgttggatgag
atcgtccaggaagtggagtccaaagcgcccgtcctgaagcgtcagagagaggagtatgag
agcatgcagaggtccatggcctccctgtgcaacaaactggaacaggctcgaatggagatc
tacagtttgcaaaaagagaaagaagacaccaagcagcgctgtgatgctctggagagagac
aaagtgaagacggagagacagctggaggacacatctgcacaggtgtgtgctcttctggtg
gagctggaggaagccagaggtaatcaggttaccaaggatgatgacagctccgccgccatt
tccagcacctctgaggtcatcagcccacgtcagctgtctttccgcagcgtggaggagctt
caaaggcagaaccaaagcctgctgggaaggctgagggagctggagcaggagaaggacaga
cagcagagccatgtaacatcagctcgtgtttcagagttagaggccagtgtggataaactt
cagaaggaggtggagcagctgagagagcagaggaaccagcagaaacagctggctgactcc
agcgccagacagagagacatgtacaaggccctgttgacgcacagcactggcttcagcctg
cctcctccaggtctagagtcttcatcccaccccacacatgttcgtccttcagtcccaggc
actcgctccactccacaaagagctgctgctgctgagtcagcacagactgctcaggctaaa
gctgctttaaaacagctcaacgatgccttcactatgtataaaaaggagaaggcagagaac
gacaggatgttgaatgaaacaaacgacaggctgcagagacagctgtcagaactcaactcc
agccacgccaagctgacgtctcaactggagttcagcaacaagaggtatgagatactccag
gagactgtatcagcctaccgcagagagatctctgcccttcaggacaggaaccaaaagatg
gctgcaacggcccagcgacacgagcacatcatccacacgatgagccaggacctgcgacag
gccaatgagaaactggctctggaagaggttcgtgttgagaacttgaccaaagagagagac
atgctgagacaagcagagagtcgactgactcgtgagaaggaagccatactggctgagcaa
cggaaccagaacctgctgctcaccaacctcaagaccatacagttgactatggagcgaaca
gagacagaggcccgccagcgactcaacaacaagatagagcatctggaggcagagctagct
tccatgaagaccaggatggaccaggaagtagcacagagacacgccctcggacgtactatg
gatgctcagctgttggaagcgaagaagcagctggagacccagaacatcttgcagcagaag
accagggagttgttgcgtagttctgaacagcaggtggcagcactgaaagcccagctggct
tctgcttcatcctctgaggctgtgaccagctccagcaacaccagcaccccagctaccaga
gctgcaggcctcagagcccccctgagagtacgctctccaggtccagcagcatctcagcag
cccagccagtcagagcaagagctgacagaggtgaaaggtcaactgcgtactgcggaggaa
cagaacagtgaactagcagagcagctgaagaatgctaatgctactgtagagcagtacaga
gctgtggtgctgactctggaagacagtctgaagaaagaaaaggagtcccgctcccccctg
gagatccgactgaaggagtcggaggaggtgcagaagcagctggagaagaggattttagag
gtggagaaaacgaagcagctggagcaggaagagaggaggaaggctctggacgcagtggag
aaacaagtgtgtgagctgcagcgcagtctgaaggccagtcagactgagcagcaggaggcg
ctggagagagcagctgcttctgctacactggagcagaaggccatccaggacagcctgctg
cagactaagcttgctggagaggctcaggctaagtatgagcgggagctcatgcttcatgct
gctgatgtggaagctctgcaggagctcaagaaaagaatccaacaagaagcaacacagaag
agggagttagaggagcaactaaacaagacttcctgcctcctgcaggagaagaccgcaacc
tggaacacactggagagacagctgaaggaggacctgtctaatcatagtcgtcgctgtgag
gagctggggaagcagaacgctctcctgcaccaacagatggatgaaatggccaccaggagt
cgtcagcagcaacaacagcagcagctcgacctgtctttcagtgaggaagggaagaccact
gaacagattctggaaatactcaggtttgtgcggcaggagaaacagatcgctgtggctcga
tgcgaggtgtctgagggagaagctctgcgctacaaacagcgagtggaacaccaagacaga
gaactgaaggagctacaggaagctctgaacgctgagagggagaaaatgcaggctacagca
aagactctgtcccagcaggaggaacagctgaagaagatggacagcatcagtgctctccag
caaaccaacaggatgctgaaaatggacagagataaactggagcaggagctgcagcaagct
caggctaaagtgaccaagctccagtcagatatcagcccactgcatcactcattgtctcag
ctgtcagagaagaatggcgccctgcaggctgataagaggattctggaagaagacctcagg
cgctggaaggccaaagcacagcagctggtgaaccaacagaaagatggtgatgtggaggac
agacagaaactgaccgctgagagagaagctcagcagagacgcatcacacagctagctgaa
gaaacagccaagctgaagactgaactggccagatccagtgccagcagtaactcgactcag
tctcagctgcaagccctcagagactctgtggcccgtctgacgtcagagagagactctctg
aagaaagaactggaaacaaaaaacaacgacattctggagaagaacaagaccattacccag
gtcaagaagatcggacgacgctacaagacccagtatgaggagctcaaagcccagcatgac
aagcttgttgcggaaacagcagctaaggcaggaagtgaggcagctccgagccaggaggtg
cagcaggagctgacgaaagcccaagaggagctcaacaaggcccgagaggagctgaaagca
ctgaaagaggaggtgcagaagaaacaggaagagacccagaaggcccagcaagacttagat
gaggcccagaaggaaacccagaagaccaaggaaaagttccaggaggtccaaaatcagctg
acccagaaccagaaccaactgacacaggtccagtcccagttgtcccagacccagactcaa
ctgcagcagaatcagaaccaattgacccagagtcagaaagaccttcaacaagccaaagcc
cacacccagcaggtacagaaccagttaaaatcagctcagtctcaagctcaggcccgtcag
aaccagattcagcagatccagagggagctccagcaggcgaaagaagccctccagcagaac
ctcgccagtcagaaagagttacaacagacccaccagaccagtcaacacagccacaaccag
gaggtcagcaatctcaagactgctctgagccaagcagaggccaaggtgatggagctccag
ggccagctggacagcctgcagaagacggttggtgagcaagaagcagacatcaagcgtctg
caggagcagctaactgaagctaaccaggctaatgaagctaaccgagccacacaggccaag
aactcccagtccatccaggccagtgatgctaacactgctagcgacgctaaccaggcacta
caggaggagctgactaaactccgacaagagctgtttgagagcaagaaccgagaggagcag
ctgaaacagcagatggctgataaagaggagaagacgaagaaggccttcctgggagctaag
accaaaatcaaccaactgaacaccgccaaagagcagctgagtgaggagatagaagaactg
aaacagaataaggaggagctggaggtgagaatgaacgccctcaagtcccagtatgaaggt
cgacttcttcgcctggacagagagctgagagaactgagagagacacagacacactctgac
cccagagaggagccacaggaccagagtggagctaaggtgggtgatcagcccagaactgca
gaccagagacagatatctttgaagagtccagcccaagacaggggaagctccagcctgtct
gagcctcccactgctaacatccgccccaccccaagtactccatctcctagcaacaagcca
agcccttcccctggcagcaaggccacgccccgtgccagcatccggcctatggttaccccg
gcaactgtccccatcccaacacctactgccaccgtcatgccaaccacacagactgacagc
caagaagtgctaatgggtgcaggggcctctgtacactccaccagctccggtctggtgagc
gctcccacctccataacccagccaaccagcacacaggccacagcttttgtccagcccact
cagcagcaggcagccagtcaggatgcagggtccagtatggaggcagagcgaccatccaca
tcctcctctctgattggaccagcaggttcaaaacgagccagagaggaggaggtggaggaa
gaggaagaggagagcagaccagagagttcgcacacaccccccaccactaagaaactacga
ctaaaaccaagtatagcactgcagatggagggtgatgaggagatggaaggagagctgggg
gatgagggagaacgacaggattcaccagatgacagtcaggagattccaggggaggctttc
cctgttttagccgaagacgatgaggacttagaggaagagggcgtgtcccagtctgtcccg
tcctatcagatgtcctctcagggctccactataatcagggacgtcatcgtgatcgacacg
gacagcgagagccgtgagagcaaagagggcgaggagaagcaggaggatgaaggtgaagag
gaagaggaggaggaagagatagaggagtataaggaggaggaggaggaggatgaagatgac
gatgatgccggcggcagtggaatgaggggaggagaggagagtaatgagaagagcagggac
gctgaagacgatggagaggaggaggatccatcagaggcctccaacactgaggagactgtg
tgtggagcatcttcagactcccagcatccctctgagcagccacacagcagtgaaggcagc
agcagcgccacatcagagtctgaccccacccgagaccccgtacacctccccccaaccgcc
tcctgctctgcaccctccccctcctcctccctcactccccgccttccccacccccgtagg
cccacacactccctcccgccgaggctctatatccagcctccagctccagagctgggaccc
ccccacactcagagacagtcctctcagctgcgcagaccatcagtgggacgtggacttcag
ctgacccctggcatcggcagcacgcaacatttcttcgatgatgatgacaggatggttccc
agcactcccactctggtagttccacaccgcactgatggcttcgctgaggctatacactct
cctcaggtagcaggtctgtccaccaggttcaggtttggacctccagaagacctgctgcct
cagacgtcagcctcacactctgacctgggacagctggcctctcaaggaggtctggggatg
tacgagtctcctctgttcctggctgctcatgatgaagatggaggaggaaggagtgtcccc
accacacctttacaggtggctgcaccagtgacggtcttcactgagtctctgccctcagac
actgctgacaacatggcctcccagtctgttcctatggtaacggcctccaccgggattgcc
actgcagcagacgacggagacgaggtgtttgtggagcaggaaggagaggggcctggtatt
gagtcttctttggagagccagacagacatggagtcagcaggtcagcagagtgatgatgca
tcgctgccgtccaccagccaagaccctgacaccagcagcgttacccagcggcgcccagtg
accagccaatcactgatcagcagcctgtcaggcagaggagtcagaggagggaggggggag
gccaggctgtctctgacccgcagaggaaccttctctcgaggaggaagaggggggggcatg
ggcagagggggcatcgcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (232)   
   KEGG ORTHOLOGY (1)   
   RefGene (228)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (240)   

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