KEGG   Lates calcarifer (barramundi perch): 108890636
Entry
108890636         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: bifunctional polynucleotide phosphatase/kinase
  KO
K08073  bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    108890636
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lcf01009]
    108890636
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108890636
Enzymes [BR:lcf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     108890636
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.32  polynucleotide 3'-phosphatase
     108890636
Protein phosphatases and associated proteins [BR:lcf01009]
 HAD phosphatases
  Other HAD phosphatases
   108890636
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     108890636
SSDB
Motif
Pfam: PNK3P AAA_33 FHA_2
Other DBs
NCBI-GeneID: 108890636
NCBI-ProteinID: XP_018543113
Position
LG21:2712033..2718285
AA seq 607 aa
MSCTLVGGSGTRVSLEDGRAVILGRGPDTGVTDKKCSRHQVKVVACYADQDVVVTQLGPN
PSYLDGEKLGRGQSGKLTHGGTLYLVDQRHPFKLCYSQSSNSTASGTAQKATDKAKGRKD
QEAQSSPTPKRSIKDFFPTSPTKSSKRRRSPERGHPEVKRQRRELEEEEEASGGWVKEEE
EDEEERLAEEKLRQLQELAERSNSTQPSSSSSPSSSPSKACVKSSWQQIGNLLLYTAAGV
RGSDKVAGFDIDGCIITTKSGKVFPTAPDDWRILYPEIQPRLATLLKKGYKVVFFTNQMG
IAKGKLRPEVFKSKVEDILATLQLPVQVFVATGPGIYRKPVMGMWNHLCEKASEMRTDGV
AVNKTRSFFVGDAAGRPENWAPGKKKKDFSCSDRLFALNIGLQFHTPEEYFLGWKSAPYR
LPEFDPRKLDSTARLYNPPSASLTSNKTEVIVAVGFPASGKSTFFHTHVIPKGYTYVNRD
TLGSWQSCVSACERALKEGRSVAVDNTNPDPESRKRYVDVAKAAGVPCRCFHFSASLEQA
KHNNRFREMVPSDSKHAKVNDMVFHSYKKHFVAPALSEGFTEILQIHFVPNFKDSESETL
FRQFSEG
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgtcgtgcacgctggtcggcggctctgggactcgagtctctctggaggatggacgagct
gtgattctgggccggggtccggacaccggggtcaccgacaagaagtgctccaggcaccag
gtgaaggtggtggcttgctatgcagaccaggatgtggttgtcactcagctgggtcccaat
cccagttacctggatggcgagaagctgggccggggccagtccggtaaactcacccacggg
ggcaccctgtacctggtcgaccagaggcatccgtttaaactgtgctactcccagagctcc
aacagtacagcctccggcactgcacagaaagcaacagataaagcaaaaggaaggaaagac
caggaggcgcagtcaagtccgacacctaaacgcagcattaaggatttcttccctacctca
cccacgaagtcatctaaaagacgacggagcccggagagggggcaccctgaggtgaagcgc
cagaggagagagctagaggaggaagaggaggcctctggtggatgggtgaaggaagaagag
gaggatgaggaggagaggctggcagaggagaagctgaggcagctgcaggagctggctgag
aggagcaacagcacccagccttcatcttcatcttcaccatcatcttcaccatcaaaggcc
tgtgtaaagagcagctggcagcagataggcaacctgttgctctacactgctgctggagtc
agagggagtgacaaggttgctgggtttgacatagacggctgtatcatcaccaccaagtct
gggaaggtctttcccactgcgccagatgactggaggattctgtacccagagattcagccc
aggttggccactttgctcaagaaaggatacaaggtggtgttctttaccaaccagatgggg
atcgctaaaggcaaactgagaccagaagtgttcaagtctaaagtggaggacatcctcgcc
acactgcagctgcctgtgcaggtgtttgtggcgaccggtcctggtatctacaggaaacca
gttatgggaatgtggaatcacttgtgtgagaaggcaagtgagatgcgaactgatggtgtc
gctgtgaataagacaagaagttttttcgtgggagatgctgcaggtcgaccagagaactgg
gctccagggaagaagaagaaggatttctcctgcagtgaccgactgtttgctctgaacatc
gggttgcagttccacacccctgaggagtattttttaggctggaagagcgccccctaccgc
ctgcctgagtttgaccctaggaagcttgattccactgccaggctgtacaacccaccctcc
gcctccctcacgtccaacaagacagaagtgattgtcgccgtgggtttccctgcatcgggt
aaatccactttcttccacacccatgtcattcccaaaggctacacctacgtcaacagggac
acgctcggttcatggcagagctgcgtgtcggcatgcgagcgcgctctgaaggagggccgc
agcgtcgccgtcgacaacaccaacccagaccccgagtctcgcaaacgatacgtggatgtg
gccaaagcagccggagttccctgtcgctgcttccacttctctgcctctctggaacaggcc
aaacacaacaacagatttcgtgaaatggttccatcagacagcaaacacgccaaggtcaat
gacatggttttccacagctacaagaaacactttgtggctcctgctctctccgagggattc
accgagatcctccagatccacttcgtcccgaacttcaaagacagcgaatcagaaaccttg
ttcagacagttttctgaaggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (41)   

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