KEGG   Lates calcarifer (barramundi perch): 108892258
Entry
108892258         CDS       T04895                                 
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
  KO
K05641  ATP-binding cassette, subfamily A (ABC1), member 1
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf02010  ABC transporters
lcf04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    108892258
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    108892258
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:lcf02000]
    108892258
Transporters [BR:lcf02000]
 ABC transporters, eukaryotic type
  ABCA (ABC1) subfamily
   ABCA1, 2, 3, 4, 7, 12, 13 subgroups
    108892258
SSDB
Motif
Pfam: ABC_tran ABC2_membrane_3 AAA_21 AAA_23 MukB
Other DBs
NCBI-GeneID: 108892258
NCBI-ProteinID: XP_018545227
UniProt: A0A4W6DZ86
Position
LG15:20940458..21078499
AA seq 2247 aa
MGLLTQFTLLLWKNFTLRKRQKVRLIIEVIWPLFLFFILVWVRSTNKPIYKGQCHYPNKA
MPSAGVLPWLQGMICNINNPCLNYPTPGETPGQVNNFNNSIIAGVLIELQTLLVNRSILS
KAKLLADDINQWASVLPQSTPGNAQPMILRSILREDETFSTHLRDNLSVPPTVAESLMNA
KIYVNPMMGIPRPDSLRRILCEGTDLDEYVQFSSQGEKEAFQNVSCSLTPQQLINTQQVL
LQNLDARKVLSELPSPVDMNGADTVTLMGSTAQNALPVIEEVTRLQNSMIFKAASSLNFQ
EDMIGSVNMLLCGKQPDFNSTNMTLSLRSPRQTANDESISITGNSSDAFCQTLVDTLEGT
PGLRNIWSTFKPLLLGKVLYTPDTPAARLMVKEANSTFHALAMLKELVDMWDELGPRVWN
FLQNSPQVNAIRALLGNPVFAALLNQRLSGTGLTAELLANFLYNGPPEDRPPGMPPNDWR
DAYNATSQILNLLSNALGCLDLNKFEAVPTEGHLVSKALELLKNDTYWASIVFENLQPDS
RHPPPYVKYKIRMDVDEVERTNKVKERLWSPGARDNSFNDLRYIWGGFAYLQDMMDHGII
RAQTSKTQPLGVFAQQMPYPCFVDDVFIQSIGGILPMFLVLAFMYTVCMTIKGLVLEKEL
WLKEVLRAVGIQNGALWSSRFTENIVLLTVPCLLISVMVKYGKVLQYSDPSVIFVFLLVF
CVATITQCFFISVFFSKANLAAACGGLIYFVLYLPHILCYAWRDVMGFGAKVAVSLLSCV
AFGYGCENFSKYEEQGIGIQWYNIGKSPEEGGRYTFIVSIIMMLLDAALYWMLTWYIENV
FPGQYGIPKPWYFPFTASYWCGRASVTDADPGLLKDSSAHNEYMEKPPPNMKAGVSVRNL
VKIYKNGKKLAVDGLSVDFYENQITSFLGHNGAGKTTTMSILTGLFPPTSGTALINGYDI
HTDMDSIRKYLGMCPQHNVLFNELTVEEHIYFYARLKGHSRDEVKIEMDQMIKDVGLPHK
RKDLAKNLSGGMQRKLSVAIAFVGGSKIVILDEPTAGVDPYARRGIWELLLKYKQGRTII
LSTHHMDEADILGDRIAIISHGKMRCCGSSLFLKKCFGSGYYLTLVRDGAEKMTAQRNGI
IHSKPIEEKDCPSRSSPDDGIGSQSWSSSDPSDLTAVGQLVRRHVPEAVFLESIGQEITY
ILPYGGARDGTFALLFQELDLAMADLGLTSYGISDTTLEEIFLKVAEDTGVDAEIQTTKE
LLVRDCKRSSRESKRNSIASVHTTPHQVSGLSELKEKFTSKVEDLKKNASVNGKGSTVIT
GWELIRRQFLALFIKRFHHARRSRKGLIAQVVLPAVFVCLSLIFSLIVPPFAEYPSLELQ
PWMYGLPQTTFYSNDGPDNVEVSQVVETLVNNPGFGTRCMNGNPIPKLPCSPSGSDWFAP
SVDQSITDIFLNGNWSMSNPSPSCQCSTPKRTIMLPDCLPGAGGLPPQQRIQNTTDTLLN
LTGRNMTDFLVKTFAHSGKTRYGGISVGAVNSQVRMTEGEIEAAFRNLKDLLSSFQDNVT
DQILQTSETLLKKLGTRDNVKVWFYNQAWHGMVSFLSVANNAILRGNLPAGQNPRQYGIS
VSNHPLNLTKEQLSFVAMATTSTDVVVSICVIFAMSFIPASFVLFLIQERVSKAKHLQFV
SGVNPAVYWLANFAWDMCNYIIPCLIVIVIFLCFQQKAYVSPPNLPALILLLVLYGWSIT
PMMYPASFIFSVPSTAYVVLTCINLFIGINGSVATFVMELFDDDKVSRINDIVKQVLLIF
PHFCLGRGLIDMAKNQAMAILFSSFGEDRFKDPLSWEMVGKNLCAMSIQGVVMFVITILI
QYKFFCKPRLISGKSLSAEEEDIDVARERVRVYEGKAQNDLLRIYDLTKVYPRKSTPAVD
KLCVGVPAAECFGLLGINGAGKTTTFKMLTGDIPVSSGEAFLNGYSIRTEMRDVHQNLGY
CPQFDAIDELLTGREHLEFYARLRGVPENEVTMVAEWGIQKLGLVKYFNKSAGTYSGGNK
RKLSTAIALIGCPPVIFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEAL
CTRMAIMVNGRFKCLGSIQHLKSRFGDGYTVIVRVGGSPPALKPVEDFVQQTFPGSVLKE
KHHNTLQYQLVCTQGALATIFSQFTSHQHRLGVEDYSVSQTTLDQVFVNFAKHQHGEEES
QAYDNAVDTSDELPLQSVKTSQEAEKV
NT seq 6744 nt   +upstreamnt  +downstreamnt
atgggtctcctgacgcaattcactctgctcctgtggaagaacttcactctccggaagaga
caaaaggtgcgactgatcattgaagtgatatggcctctgtttctcttcttcatactggta
tgggtgcggtccaccaataagccaatttacaaaggccagtgtcactacccaaataaagcc
atgccatcagctggtgtgctgccctggcttcaaggtatgatctgtaacatcaacaatccc
tgtctgaactacccaacaccaggggagacaccaggccaagtcaacaacttcaacaattcc
ataatcgccggagtgttgatagagctgcaaacccttctggtgaacagatctatcctcagc
aaggcgaagttgctggcagatgacatcaatcagtgggcatcagtcctgccacagtctacc
cctggtaatgctcaaccaatgatcctgaggagtattctaagagaagatgaaactttctcc
acacatctgagagataatttgtcggtgccgccaacagtcgcagaaagcctcatgaatgct
aaaatttacgtcaatccaatgatgggtattccaaggccagacagcctgaggaggatcctg
tgtgaggggacagatctggatgagtacgtccaatttagcagccaaggcgaaaaggaggct
tttcaaaatgtcagctgctccctcactccgcagcagctgattaacacccagcaagtactc
ctgcaaaacctggatgcgaggaaagtgctttctgagctaccttcacctgtggatatgaat
ggagcagacactgtgacactgatggggagcactgctcaaaatgcattaccagtgattgag
gaggtgaccaggttgcagaactccatgatctttaaggctgctagttcactgaatttccaa
gaggacatgattggcagtgtcaatatgcttctgtgtggaaagcagcctgacttcaattcc
accaatatgaccctcagtttacgctcacctagacagacggctaacgacgagtctatctcc
attactgggaacagttctgatgctttttgtcagactcttgtcgacaccctggagggcaca
cctggtctgcgtaacatttggagcaccttcaagccgttattgctaggcaaagtcctctac
acacctgatacacctgctgctcgcctcatggtgaaagaagcaaacagcacattccatgcc
ttggctatgttaaaagagcttgttgatatgtgggatgaacttgggccacgtgtttggaat
ttccttcaaaatagccctcaagtaaatgcaatacgggctttgctggggaacccagtgttt
gctgctctcctcaaccagcgtctcagtggcacaggcttgacggccgagctgctggccaac
ttcttgtacaatgggcctcccgaggatcgtccacccggcatgccgcccaatgactggcgg
gatgcttacaacgccacttcccaaatcctgaaccttctctccaatgcccttggctgttta
gacctgaataagtttgaggcagtccccactgaaggccatctggtgagcaaagcactggag
cttcttaagaatgatacgtactgggccagcattgtctttgaaaacctccagccagactcc
aggcacccccctccttatgtcaagtacaaaatccggatggacgtcgatgaagtagagcgc
accaacaaagtgaaagaaaggttatggtctcccggggcccgagacaactcctttaacgac
ctgcgctatatatggggaggcttcgcttacctgcaggatatgatggaccatggcattata
cgagcgcagacgtcaaagacccaacccctcggtgtttttgcccagcaaatgccataccct
tgttttgtggatgacgtcttcatccagagtattggaggcatcctcccaatgttccttgtg
ctggccttcatgtacactgtgtgcatgaccatcaaaggtctggtgctagagaaggaactg
tggctcaaggaagtgttgcgtgctgttggcattcagaacggcgccctttggtcttcaagg
ttcaccgagaacattgttctgctcacagttccctgcttgctcataagtgtcatggttaag
tatggtaaagtgctgcagtacagcgacccctcagtaatctttgtcttcctgctggtgttc
tgcgtggccaccatcacacagtgcttcttcattagcgtcttcttctctaaggccaactta
gcagcggcatgcggtggcctcatctactttgtcctctatctgccgcacatcctctgctac
gcctggagggacgtcatgggtttcggggccaaggttgctgtgagtttattatcctgtgtg
gcctttggctatggctgtgagaacttttccaagtatgaggagcaaggcatcggtatccag
tggtacaacattggcaagagtccagaagaggggggacgctatacgttcattgtgtccatc
attatgatgctccttgatgctgctttatactggatgctcacctggtacattgagaatgtc
tttccaggccaatatggaatccctaagccatggtacttccctttcactgcatcttattgg
tgtgggagagcctcagtgactgatgctgaccccggtttgctgaaagactcaagtgcacat
aacgaatacatggagaaaccaccacccaatatgaaagcaggggtctcagtccgcaatctt
gtcaaaatctacaagaatggaaagaagcttgccgtggacggactgagtgtggacttttac
gagaatcagatcacatcttttcttggccacaatggagctggaaaaacaaccacaatgtca
attctgacaggactgttcccgcctacgtcaggcacggccctcatcaatggatatgacatc
cacaccgacatggacagcatccggaagtatttgggaatgtgcccacagcacaatgtctta
ttcaatgagctgacagtggaggagcacatctacttctacgctcggctgaaaggacacagc
cgtgatgaggtgaaaattgagatggaccagatgattaaggatgttggtttaccacataaa
cggaaggatcttgctaagaacctgtcaggtggcatgcagaggaagctgtctgtggctata
gcatttgtcggcggctcgaaaatcgtcatcttagatgaacctacagcaggagtggacccc
tatgcccgcaggggtatctgggaactgctgttaaagtacaaacaaggtcgcaccatcatt
ttgtctacacaccacatggatgaggcagacatcttaggtgatcgcattgccattatctcc
cacggcaaaatgcgttgctgtggctcctcactcttcctgaagaaatgttttggcagcggc
tactacctcactctggtccgagatggggctgaaaagatgacagctcagcgtaatggtatt
attcacagtaaacccattgaggagaaagactgtccttcgaggagcagtccagacgatggc
atcggcagccaaagctggagcagctctgatccctcagatttgacagccgtgggtcagctt
gtgcggcgtcatgtccccgaggcggtcttcttggagagcatcggtcaagagatcacctac
atactgccctatggtggggccagagatgggacctttgctctgctcttccaagagctcgac
ctggccatggctgacctcggtctgaccagctacggcatctctgacaccacactggaggag
atatttcttaaagtggccgaagatactggagtggatgcagaaatacaaacaacaaaggag
ctgttggtgagagactgcaaaaggagctcccgcgaatccaagcggaacagcatcgccagc
gtccacaccacaccacaccaagtctctggactgagtgaattaaaggaaaaattcacaagt
aaagttgaagacttaaagaagaacgccagtgtgaatgggaagggatccacggtcatcact
gggtgggagctgatcaggaggcagttcctggcgctctttatcaagcgcttccaccacgcc
cggaggagccgcaagggactcattgcccaggtggtcttgcctgctgtttttgtgtgcctg
tctctgatcttctcgctcatcgtcccgcctttcgctgaatatcccagtctggagctgcag
ccctggatgtatggtctgcctcagaccacattttatagcaacgatgggccggataatgtg
gaggtgtctcaagtggtggaaaccttggtaaacaaccctggatttggaacccgctgcatg
aatggaaaccccataccgaaattaccatgttcccctagtggatctgattggttcgctccg
tccgtagatcagtcaatcaccgacatctttctcaacgggaactggagcatgtctaacccc
tccccatcctgtcagtgcagcacgccaaaacggacgatcatgttacctgactgtctacct
ggtgccgggggcctccctccacagcagaggatccagaacacaacagacacattgctgaat
ttaactggacggaacatgacagacttcttggtcaaaacttttgcgcactcgggtaaaaca
aggtacggagggatctctgtcggagcggtcaactcccaagtccgcatgactgagggagaa
atcgaagctgcattcaggaatctaaaagacctactcagttcatttcaggataatgtgact
gatcagatcttacagacgtctgagacgctgctgaagaagctgggaaccagggacaacgta
aaggtgtggttctataaccaggcatggcacggcatggtgtctttcctcagtgtggccaac
aacgccatcctgaggggaaatctgccagcgggacagaatccccgccagtacggcatctct
gtgtccaatcaccccctcaacctcaccaaagagcagctctcctttgtggccatggccaca
acctccactgacgtggtggtgtccatctgcgttatctttgccatgtccttcatccctgcc
agctttgtcctcttcctcatccaagagcgggtgagcaaagccaagcatctgcaatttgtc
agcggagtgaacccagctgtatactggttggccaattttgcctgggacatgtgtaactac
atcatcccatgcttgattgtgattgtgatcttcctctgcttccaacaaaaagcctatgtt
tcccctcctaacctgcctgctctgattctgctgcttgttttgtatgggtggtccatcacc
cccatgatgtaccctgcctctttcatcttcagcgtgcccagcacagcctacgtggtgctg
acctgcatcaacctcttcattggtattaacggcagcgtggccacctttgttatggagctc
tttgatgatgataaagtctcccgcatcaacgacatagtgaagcaggtgctgctgatattc
ccacatttctgtctgggcagagggctaattgacatggccaagaaccaggcaatggccatc
ctcttcagcagttttggggaagatcgtttcaaagatccactgagctgggaaatggtggga
aagaacctttgcgccatgtccatccagggagttgtcatgtttgtcatcacaatcctcatc
cagtataagttcttctgcaaaccgaggcttatttcagggaagtcattatctgcagaggaa
gaagatatcgatgttgctcgagaacgtgtccgagtgtatgagggcaaggcccagaatgac
cttctgaggatctatgacctcactaaggtataccctcggaagagcacccctgctgtggac
aagctatgtgtgggcgtacctgccgcagagtgtttcggcttgctgggaatcaatggggct
gggaaaaccaccacattcaagatgctgacaggagacatcccagtctccagtggagaggcc
ttcctaaatggatacagcatacgaacagaaatgagggatgtgcaccagaacttgggttat
tgtccccaatttgatgctattgatgagctgcttactggacgagaacatctggagttttac
gccaggttacgaggggtaccagaaaacgaggtcaccatggttgcagagtgggggatccag
aagttggggctggtcaaatatttcaacaagtcagcaggaacttacagcggtggaaacaaa
cgcaaactctctacagctatagccctgatcggttgtcctccagtgatctttctggatgag
ccaaccactgggatggaccccaaggcccggcgcttcttgtgggactgcatcctaagtgtc
atcaaagaaggacgctcagtcattctcacttcacacagtatggaggagtgtgaagcattg
tgcacacgcatggccatcatggtaaacggtcgcttcaagtgtctcgggagcatccagcat
ctaaagagcaggtttggtgatggctacacagtgattgtgagggttggtggctctcctcct
gccttgaagccagtcgaggacttcgtccagcagaccttcccaggcagtgtcctgaaggag
aagcatcacaacactctacagtatcagctggtgtgcacacagggagctttggccaccatc
ttcagccagttcaccagccatcaacacagactgggtgtggaggactactcggtttcgcag
accactctggatcaggtctttgtgaattttgcaaagcaccaacatggagaagaggagtct
caggcctacgacaacgcagtggacacttctgatgagctgccactgcagtctgtgaagacc
tcccaagaagcagagaaggtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (63)   

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