KEGG   Lates calcarifer (barramundi perch): 108892295
Entry
108892295         CDS       T04895                                 
Symbol
cd40
Name
(RefSeq) tumor necrosis factor receptor superfamily member 5 isoform X1
  KO
K03160  tumor necrosis factor receptor superfamily member 5
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04060  Cytokine-cytokine receptor interaction
lcf04514  Cell adhesion molecules
lcf04620  Toll-like receptor signaling pathway
lcf04672  Intestinal immune network for IgA production
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    108892295 (cd40)
   04514 Cell adhesion molecules
    108892295 (cd40)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    108892295 (cd40)
   04672 Intestinal immune network for IgA production
    108892295 (cd40)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04050 Cytokine receptors [BR:lcf04050]
    108892295 (cd40)
   04090 CD molecules [BR:lcf04090]
    108892295 (cd40)
Cytokine receptors [BR:lcf04050]
 Tumor necrosis factor receptors
  TNF receptor superfamily
   108892295 (cd40)
CD molecules [BR:lcf04090]
 Proteins
  108892295 (cd40)
SSDB
Motif
Pfam: TNFR_c6
Other DBs
NCBI-GeneID: 108892295
NCBI-ProteinID: XP_018545316
Position
LG6:complement(23555151..23560517)
AA seq 320 aa
MWGLITGATTMRLLLMMFVLTATASAELNCDPLTQYAKNGECCKMCPPGTSMSNIGSCQE
PQCQECKENEYQDKYTFESKCQLQPYCDKNSGFEKPVHQSKKERTTCKCENGFHCSSQTC
IICVAHTTCKPGEGVRFEGNHTDDRVCWKCPNGWFSNSENSTCQKLTECADGYTVKVKGT
DTSDTVCEIQLRQHLALIVVCLLIALTITVAFVVYLCKGDARRKVKGCVEACRADKQELP
GEANTLMVTQEETEKELTIPEQPSTQEEGASRTPEENEDELSTELSAGVIITDNGNYVVQ
ENGKADILSRQESQTQTYTD
NT seq 963 nt   +upstreamnt  +downstreamnt
atgtggggtcttataacaggagccactacaatgcgtctactgctgatgatgttcgtgtta
acggcgacagcctccgctgagctcaactgtgacccactaactcagtatgcgaagaatggc
gaatgctgcaaaatgtgtcctccaggtaccagcatgtcgaacatcggctcttgtcaggaa
cctcagtgccaagagtgtaaggagaacgaatatcaggataaatacacatttgaatccaag
tgtcagcttcagccgtactgcgacaaaaatagcggctttgagaagcctgtccatcagagc
aagaaggaacgaaccacctgcaagtgtgagaacggattccactgctccagtcagacttgt
ataatctgtgtggcacacacaacctgtaaaccaggagagggtgttcgtttcgaaggcaat
cacacagacgacagagtgtgttggaaatgtcccaatggctggttttcaaattcagagaac
agcacctgtcagaaattaacagaatgtgcagatggatataccgttaaagtcaaagggaca
gacacatctgacaccgtctgtgaaatacagttacggcagcacttggctctgatcgtcgtt
tgtcttttaattgctttaacaattacagttgcattcgtagtctatctgtgcaaaggagat
gcaaggagaaaggtaaagggctgtgtggaggcatgtcgtgcggacaaacaggagctaccg
ggagaagccaacacactaatggtgacccaggaagaaactgaaaaagagctcacaattcct
gaacagccgtccacacaagaggagggtgcttcacggacgccggaggagaacgaggacgag
ctaagcacagagttgtccgcgggagttattatcactgacaatggaaactatgtggtacag
gagaacgggaaagcagatatcctctccagacaggaatcacaaacgcagacatacacagac
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (33)   

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