KEGG   Lates calcarifer (barramundi perch): 108897811
Entry
108897811         CDS       T04895                                 
Name
(RefSeq) ubiquilin-4
  KO
K04523  ubiquilin
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108897811
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lcf04131]
    108897811
   03051 Proteasome [BR:lcf03051]
    108897811
Membrane trafficking [BR:lcf04131]
 Autophagy
  Chaperone mediated autophagy (CMA)
   Selective cargos
    108897811
Proteasome [BR:lcf03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    108897811
SSDB
Motif
Pfam: ubiquitin STI1-HOP_DP UBA Rad60-SLD Ubiquitin_5 YukD CUE HOIP-UBA Dsc3_N Rad60-SLD_2
Other DBs
NCBI-GeneID: 108897811
NCBI-ProteinID: XP_018553118
Position
LG3:10928133..10935259
AA seq 581 aa
MADQGAADPGNNNNNKPEASEGTIIKVTVKTPKDKEEIAIAEDASVTQFKEEISRRFKAK
QDQLVLIFAGKILKDGDSLSQHGIKDGLTVHLVIKTAHKGGDGGSTSASSSSSTQAGSTS
TSSPGTNPSSTAGPTGPAPPPTQTPNILTGFGDLASLAGLGMGSANFMELQQQMQRQLMS
NPEMLSQIMENPLVQNMMSNPDLMRQMIMANPQMQQLMERNPEISHMLNNPELMRQTMEL
ARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGSNPFSALGG
SSESGAQPSRTENREPLPNPWGPPNSSNPSESGGGTTGSTSTTGGTNPSVSNPLGINPGS
LGNGMFNSPGMQSLLQQISENPQLMQNMLSAPYMRSMMQSLAQNPELASQVLMNNPLFAG
NPQLQEQFRAQLPIFLQQMQNPEALSVMTNPRAMQALMQIQQGLQTLQTEAPGLMPSLMS
GGIPGIPTGGGLPTENPASSPSSAGTNTAQQQLMQQMLQMFAGGGGGGGATTQTPEVRFQ
SQLDQLNAMGFINREANLQALIATGGDINAAIERLLGSQPS
NT seq 1746 nt   +upstreamnt  +downstreamnt
atggctgaccaaggcgccgcagatcctggtaataacaacaataataaacctgaagcctcg
gagggaactattattaaggtcacagtgaaaacccctaaagacaaagaagaaatcgccatc
gcagaggatgcctctgtcactcagttcaaagaagagatctcgaggcggttcaaagccaaa
caggaccagttggttctgatttttgcagggaagatcttgaaagacggcgacagcctcagc
caacacggcatcaaggatggcctgacagttcacctagtcataaagacagcacacaaggga
ggagatggtggtagcacctcggcctctagctcatcctccactcaagcaggcagtacgtcc
acctctagtccaggcaccaacccctcctccacagcaggcccaactggccctgccccacca
cccacacagacgcctaacatactgactggctttggtgatctggcaagtctggcgggactg
ggcatgggctcggctaacttcatggaactgcagcagcagatgcagaggcagctcatgtcc
aacccagagatgctctctcagatcatggagaacccgctggtgcagaacatgatgtccaac
ccagacctgatgaggcagatgatcatggccaatccgcagatgcaacagctgatggaacgc
aaccctgaaatctcccacatgctcaacaatcctgagctcatgagacagactatggagctg
gccaggaaccccgccatgatgcaggaaatgatgcggaaccaggaccgggctctgagtaac
ttggagagcatcccaggaggttacaatgccttgcggaggatgtacacagacattcaggaa
cccatgttcagtgctgccagggaacagtttggtagcaacccgttctcagctctaggtggc
agctctgagtctggtgcccagccatcgcggacagagaaccgggagcccctgcccaatcca
tggggcccaccaaattcttctaatccctctgagagtggagggggcaccacgggaagcact
agcaccactgggggtaccaaccccagtgtgtccaacccccttggcatcaaccctggcagt
ctgggtaacggcatgttcaacagcccgggcatgcagagtctactgcagcagatctcagaa
aaccctcagctgatgcagaacatgctgtctgctccctacatgcgcagtatgatgcagtca
ctggctcaaaacccagagttggcctcccaggttttgatgaataatcccttgtttgctgga
aacccacagctgcaggaacagttcagagctcagctgcccatctttctgcagcagatgcag
aacccagaagccctatcagtgatgaccaaccccagagccatgcaagctctaatgcagatt
cagcagggtctacagacgctgcagacagaagcaccaggcctcatgcccagtttgatgtca
ggtggaattcctggcatacccacaggagggggcttgcccacagagaacccggcctcctca
cccagcagtgcaggaacaaacaccgcccagcagcagctgatgcaacagatgctccagatg
tttgctggaggaggtggaggaggaggtgcaacgacccagaccccggaggtgcggttccag
tcccagctggaccagctgaacgccatgggcttcatcaaccgcgaggccaacctgcaggcc
ctcatcgctactggaggagacatcaacgccgctatcgagagactgctgggctcacagccc
tcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (10)   
   Pfam (10)   
All databases (49)   

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