KEGG   Lates calcarifer (barramundi perch): 108898115
Entry
108898115         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: G1 to S phase transition 1, like
  KO
K03267  peptide chain release factor subunit 3
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    108898115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108898115
   03012 Translation factors [BR:lcf03012]
    108898115
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     108898115
Translation factors [BR:lcf03012]
 Eukaryotic type
  Release factors
   108898115
SSDB
Motif
Pfam: GTP_EFTU GTP_EFTU_D3 GTP_EFTU_D2 PAM2 MMR_HSR1
Other DBs
NCBI-GeneID: 108898115
NCBI-ProteinID: XP_018553506
Position
LG11:20782223..20798160
AA seq 579 aa
MDPRDTAPDSWEQEDDVEATIDGQLEPAFTTLNVNAKPFVPNVNAAEFVPAFAMKAHSEN
LDSAVAVEKISTMEVSESTAPVENGDTEMTTEEPWDQKEAEPNEEEPGGGSCGDRGPAVA
ATTEETAPEMMEEEEEMPVPKVPLIQPDAPKKEHINVVFIGHVDAGKSTIGGQIMYLTGM
VDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETDKKHFTILDAP
GHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLVN
KMDDPTVNWSLERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEPTDMCSWYT
GLPFIPHLDSLPNFNRSSDGPVRLPIVDKYKDMGTVILGKLESGSISKAQQLVMMPNRHV
VEVLSLLSDDVETDDAGPGENLKLRLKGIEEEEILPGFILCNAENLCHSGRTFDAQIVII
EHKSIICPGYNAVLHIHTCIEEVQITALICLVDKKTGEKSKTRPRFVKQDQVCIARLRTA
GTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVAERD
NT seq 1740 nt   +upstreamnt  +downstreamnt
atggacccgagagacactgcccctgattcctgggaacaagaggacgatgtggaggccaca
atcgacggacaacttgaaccagcattcacaaccctaaatgtgaatgctaaaccgtttgtg
cccaatgtaaacgccgccgaatttgttccggcttttgccatgaaagcacactcggaaaat
ctcgattccgctgtcgctgttgaaaaaatatccaccatggaggtgtcagaaagcactgct
ccagtggagaacggtgacacagagatgaccacagaggagccgtgggaccagaaagaggct
gagccaaatgaggaggaaccaggaggcgggtcttgcggggaccgggggccagcagtggcc
gcaacaacggaggagacggctccagagatgatggaggaggaggaggaaatgccagtgccc
aaggttccactcatacagccagacgcccccaagaaggaacacatcaacgttgtattcatc
ggacacgtagatgctggcaagtccaccattggcggacaaatcatgtacctaacaggcatg
gtagacaagagaaccttagaaaagtacgagagagaggccaaggaaaagaaccgagaaacc
tggtatctatcttgggctttggacaccaaccaagaggagagggacaaaggcaagactgtg
gaggtgggccgggcatactttgagacagacaaaaagcactttaccattctagacgctcca
ggccacaaaagctttgtgcccaacatgattggaggtgcatcacaagcagatttggctgtt
ctggtgatctctgccaggaaaggcgagtttgaaactggttttgagaagggtgggcagaca
cgggagcacgccatgttggccaaaacagcaggcgtcaagcacctgatagttctggtgaat
aaaatggacgatcctacagtcaactggagccttgagaggtatgaagagtgtaaggagaaa
ctggtgccatttttgaagaaggtgggcttcaacccgaagaaagacattcacttcatgcca
tgctctgggctgacaggagccaacctgaaggagcccactgacatgtgctcctggtacaca
ggtttgccattcattccacatttggacagtttgccaaatttcaacagatcaagtgacggc
cctgtcagattgcccattgtagacaaatacaaggacatgggtacggtgattctaggaaaa
ctagagtccggctccatcagtaaagcacagcagctggtcatgatgccaaacaggcatgtg
gtggaggtgttgagtcttctgtcagatgatgtggagacagatgatgctgggccaggtgaa
aacctcaagctgaggctgaagggcattgaggaggaggagatcctgccaggctttatcctg
tgtaatgctgagaacctctgccactcagggcgcacctttgacgcccagatcgtcatcatt
gaacacaaatccatcatctgtccaggttacaacgcagttcttcacattcacacctgcatt
gaagaagtgcaaattacggccttaatctgtctggtagacaagaagacaggagagaagagt
aagacacgaccacgatttgtcaaacaggaccaggtctgcatcgcccgtctgcgcacagca
ggaaccatttgcctcgagacctttaaagactttcctcagatgggacggtttaccttacgg
gatgaaggtaagaccattgccatcggtaaggtgctgaagctggttgctgagcgggactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (43)   

Download RDF
DBGET integrated database retrieval system