KEGG   Lates calcarifer (barramundi perch): 108898696
Entry
108898696         CDS       T04895                                 
Name
(RefSeq) replication protein A 32 kDa subunit
  KO
K10739  replication factor A2
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03030  DNA replication
lcf03420  Nucleotide excision repair
lcf03430  Mismatch repair
lcf03440  Homologous recombination
lcf03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108898696
   03420 Nucleotide excision repair
    108898696
   03430 Mismatch repair
    108898696
   03440 Homologous recombination
    108898696
   03460 Fanconi anemia pathway
    108898696
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lcf03032]
    108898696
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108898696
DNA replication proteins [BR:lcf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    108898696
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     108898696
   MMR (mismatch excision repair)
     108898696
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     108898696
SSDB
Motif
Pfam: RPA_C tRNA_anti-codon TFA2_Winged_2 LexA_DNA_bind
Other DBs
NCBI-GeneID: 108898696
NCBI-ProteinID: XP_018554209
UniProt: A0A4W6DH70
Position
LG15:8262765..8267153
AA seq 275 aa
MWNQGGYSETSTVGGYTQSPGGFASPALSQGGDKKGRTRANQIIPCTVSQLMSASQADEA
FKVGDVEVAQVTIVGIIRSTDKSMTNIQYKVDDMTGAPMDVKQWVDTEDPSVDSTVLPPG
TYVKVSGNLRSFQNHRSVVAFSVRPLEDMNEITSHMLEVVQAHMVLGKPQSMSGAGGGTS
SNVAPMSRSGTDNTGGSYAGANDMVNNGLSANQNQVLSLIRSCQDAQGISIQDLKQRLSG
MSLAVIKQAVEFLSNEGHIFSTIDEDHFKSTDSDD
NT seq 828 nt   +upstreamnt  +downstreamnt
atgtggaaccagggagggtacagtgagaccagtacggtgggaggttacactcaatcccca
ggaggctttgcatcacctgccttatcccagggaggagacaagaaagggagaactcgtgca
aaccagataatcccctgcacagtgtctcagctgatgtctgcttcccaggcagatgaggcc
ttcaaagtaggagatgtggaagttgcccaggttacaattgtgggtatcatcaggagcaca
gacaaatccatgaccaacatccagtacaaggttgatgacatgacaggcgctcccatggat
gtgaagcagtgggtagacaccgaggaccccagtgtggacagcacagtcctgcccccaggc
acttatgtcaaagtttctggaaatctgcgctcctttcagaaccacaggtctgtcgtggcg
ttcagcgtcagacccctggaggacatgaatgaaatcacctcgcatatgctggaggttgtc
caggcgcacatggtgcttggcaaacctcagtccatgtcaggggctggaggaggaacaagc
agtaatgtcgcacctatgtcacggtctggcacggacaacacgggagggagctatgctggt
gctaatgacatggttaacaatgggttaagtgcgaaccagaatcaggttctgagtttaata
agaagctgccaagacgcacagggcatcagcatccaggacctaaagcagagactaagtggc
atgagtctggctgttataaagcaagcagtggaatttctaagcaatgaaggtcacatcttt
tccaccattgacgaagaccacttcaaatcaacagacagtgacgattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (49)   

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