KEGG   Lates calcarifer (barramundi perch): 108898936
Entry
108898936         CDS       T04895                                 
Name
(RefSeq) probable nuclear hormone receptor HR38
  KO
K04465  nuclear receptor subfamily 4 group A member 1
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04010  MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    108898936
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lcf03000]
    108898936
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:lcf03310]
    108898936
Transcription factors [BR:lcf03000]
 Eukaryotic type
  Zinc finger
   Cys4 nerve growth factor IB-like
    108898936
Nuclear receptors [BR:lcf03310]
 4. Nerve growth factor IB like
  4A. Nerve growth factor IB like receptor
   108898936
SSDB
Motif
Pfam: Hormone_recep zf-C4
Other DBs
NCBI-GeneID: 108898936
NCBI-ProteinID: XP_018554598
UniProt: A0A4W6FVQ8
Position
LG12:complement(20244067..20250267)
AA seq 591 aa
MPCVQTQYASLPHDTYFSSEFLNPDLSAKLVMDISGQKDQLSTSSLPSINTLVGNGYVGE
FDAYSCKITTSPPASTVPFNHTAVAESSGPQMQNQAFRLDDLQVYGCYPGSFALSCLDET
LSSCGSDYYGSPVYAATSPPTPGFQAQSAPVWDSPFSPYPSAPPSSVADKAAMAQQLSFF
TFSPTPEQHSPLAHHQDAQPGQEDPFFLPHQQHVSPLHCPPISLEHGPLETPRIAEGAMT
SPKNHNPGSSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKDCPVDK
RRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKTVAEASSTTPSVNIISSLV
RAHLDSNPTIGKLDYSKYQETVDNLKEKEDAGDIQQFYDLLTGALDVIRNWAETIPGFTD
FCTEDQELLLESAFVELFILRLAYRSNPEKNKLIFCNGVVLHRLQCVRSFGDWIDSIMDF
SHSLHRMNLDVSLFACLAALVIITDRHGLKEPKRVEDFQNHLITCLREHVSGNGSEPSRT
QPNYLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIVEKIFMDTLPF
NT seq 1776 nt   +upstreamnt  +downstreamnt
atgccctgtgtacaaacccaatatgcatccctgccccatgacacctacttcagctctgag
tttttgaatcctgacctcagtgccaaactggtgatggacatcagtggccaaaaggaccag
ctgtctacatcttcattgcccagcatcaacactttggtgggaaatggctatgtgggcgag
tttgatgcttattcctgcaagattaccacctctcctcccgcctctacagttccattcaat
cacactgcggtagctgaaagctctggccctcagatgcagaaccaggccttcaggctggat
gatctccaggtgtatggctgttacccaggctcctttgcactcagctgcctcgatgaaaca
ctgtcatcatgtggctcagactactacggcagcccagtttacgctgctacttctcctcca
acgccaggctttcaggcccagtctgcacctgtctgggattcccccttcagcccctacccc
tcggcccctccctcctctgtggccgataaggccgccatggctcagcaactctcctttttt
accttcagccccacaccagagcagcactctcccttggcgcatcatcaggatgctcagcca
ggccaggaagacccattcttcttgcctcaccagcagcatgtctctccacttcactgtccc
cccatatccctggagcatgggcctctggaaacccccaggatagcagagggggccatgact
tctcctaaaaaccacaacccagggtctagtgagggccgctgtgcagtttgtggcgacaat
gcatcttgtcagcactatggagttcgcacctgcgagggctgcaaaggcttcttcaagaga
actgtacagaaaaatgcaaagtacgtgtgccttgccaataaagactgtcctgtggacaag
aggaggagaaaccgttgccagttctgtcgtttccagaaatgtcttgcagtgggaatggtc
aaagaagttgttcgcacagacagcctcaaaggtcgccggggtcgcctgccctccaaaccc
aagaccgtggctgaggcttcatccacgacccccagtgtcaacatcatatcatctcttgtc
agggcacatctagactcaaacccaaccattggaaagctggactactccaagtaccaggag
acagtggacaacctgaaagaaaaggaggatgctggtgacatccagcagttttatgacctg
ctgacaggtgccttggatgtgatcagaaactgggctgaaaccatcccaggattcacagac
ttctgcacagaggaccaggagctccttcttgaatctgcctttgttgagctcttcatcctc
cgtctagcatacaggtcaaatccagagaagaacaagttaatcttctgcaacggtgtcgtc
ctccaccgactgcagtgcgtccgcagtttcggcgactggattgattctatcatggatttc
tcccacagtcttcatcgcatgaacttggacgtttcattgtttgcctgccttgcagcgctt
gtcatcatcactgatcgccatggcctcaaggagcccaaacgggtcgaggactttcagaat
catctcatcacttgtttgagggaacacgtgagtggaaacggatcagaaccgagcaggacc
cagcccaactatctctcgcgtcttctgggcaaactccccgagctgaggactctgtgcaca
caaggcctgcagcgtatcttttacctgaaactggaggacctagtcccccctccaccgatt
gtggagaaaatctttatggatactctgccgttctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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