KEGG   Lates calcarifer (barramundi perch): 108899536
Entry
108899536         CDS       T04895                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, E-S beta chain
  KO
K06752  MHC class II antigen
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04145  Phagosome
lcf04514  Cell adhesion molecules
lcf04672  Intestinal immune network for IgA production
lcf05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    108899536
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    108899536
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    108899536
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    108899536
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcf04147]
    108899536
Exosome [BR:lcf04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   108899536
  Exosomal proteins of epithelial cells
   108899536
  Exosomal proteins of breast milk
   108899536
SSDB
Motif
Pfam: C1-set MHC_II_beta C2-set_2 Ig_3 I-set
Other DBs
NCBI-GeneID: 108899536
NCBI-ProteinID: XP_018555538
Position
LG15:complement(4903690..4907995)
AA seq 265 aa
MMMIGLCFLCSLTISAVLFCTTPTGGYVYQMIYDCEYGDNITDMVFFVKNIFNQKLNNLY
DSRVGRYVGFGEYGMKNADHFNSQAWKMALRKAQVETLCRYNARLFRRSTLDRKVPPIVR
VRQTKPADYGERSMLECSVVGFFPQEVRVSWLRDGVEVTTDVSSTDVLANGDWSFQLHSY
LELILKRGERVTCRVDHSSLKESLEVDWDTFSLDVKYLKMAVGISMLFIGFAVAAGGSVY
YWWKQRFDFSPVGRQGQTSPCICEF
NT seq 798 nt   +upstreamnt  +downstreamnt
atgatgatgattggactttgttttctgtgcagtctcacaatttctgctgttctgttctgc
actacaccaacaggtggctatgtgtatcagatgatatatgactgtgagtacggtgacaac
atcacagacatggtcttctttgttaaaaacatatttaaccagaaacttaacaatctatat
gactctcgggttgggaggtatgttggctttggagaatatggcatgaaaaatgcagaccac
tttaacagtcaggcttggaaaatggccttaagaaaagctcaagtggagactctttgcaga
tacaacgcaagactgttcagaaggagcacactggatagaaaagtgcctccgattgtcagg
gtccgtcagaccaagccagctgactacggggaacggtccatgcttgagtgcagcgttgtg
gggttttttcctcaagaagtgagggtgagctggctgagagacggtgtggaggtcaccacc
gacgtgtcgtccacagatgtcctggccaacggggactggagtttccagcttcactcttac
ctggagctgatacttaagagaggggagagggtgacctgcagggtggaccacagcagtctg
aaggagagcctggaggtggactgggacaccttttctctggatgttaaatatctgaagatg
gcggtggggatcagcatgttatttattggcttcgctgtagctgctggcggatcagtttac
tactggtggaaacagaggtttgacttcagtccagttggcagacaaggacaaacatctcca
tgtatttgcgagttttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (26)   

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