KEGG   Lates calcarifer (barramundi perch): 108901021
Entry
108901021         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04510  Focal adhesion
lcf04512  ECM-receptor interaction
lcf04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    108901021
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    108901021
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108901021
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcf04147]
    108901021
   00536 Glycosaminoglycan binding proteins [BR:lcf00536]
    108901021
Exosome [BR:lcf04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   108901021
Glycosaminoglycan binding proteins [BR:lcf00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108901021
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   108901021
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3
Other DBs
NCBI-GeneID: 108901021
NCBI-ProteinID: XP_018557859
Position
LG1:20098683..20110710
AA seq 1021 aa
MGMISGLIFLCMLQSAITRTDPFPPAPIRPEGCETGIIDCPIKVFFTIDTSETIALQESP
PGSLVKKIQEFTKIFAQRLDDEEYKGQVHITWSIGGLHFSQTQVVFCDLTTRETFIRNIT
NIKYLGKGTYTDCALKQMASKLTRHHWDTKVVLFSVVITDGHVTGSPCGGIKVMAESARD
KGIQIFSVAASRMIDEIGMREIASSPIELYRDDYIVVDTLSGKPEIKTDSIDRIIKAMKY
QAYLQCYQQKCLETPGPPGPKGPPGLKGTKGASGQPGPKGAKGRQGDPGIEGPIGRPGPK
GESGLKGDKGETGTIGAKGVAGVPGRNGTDGQKGKMGRIGAPGCKGDPGDKGPDGYHGEV
GETGPRGDKGEKGDDGHPGKSGPPGPEGDQGPKGERGNPGIPGPPGQKGSPGAPGGPGPP
GEEGRRGDPGIKGAQGPDGLKGEKGERGPQGGRGRPGEEGFKGAKGDQGLPGPRGQPGEA
GGPGANGTRGNPGDPGPRGDTGPPGPKGDKGRTGFSYSGPRGPTGDKGNPGRRGPRGGRG
DCGAKGEPGNKGPTGDPGKPGEPGEPGERGPRGNPGPDGDPGPMGDPGLTDCDVMTYIRE
TCGCCDCEKRCGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSMASDPASPTGTRV
GVVQYSHNGTFEAIHLDDPNINSMSAFKTAVKNLKWIAGGTFTPSALKFAYDTLIRDSKR
ARARVSVVVITDGRYDSRDDEDLLNYLCRDSNVVVNAIGVGDMFQKTQDNEVLGSIACNN
KGRVSGLMRYADLVAEDFIEKMETVLCPEPVIMCPDLPCKTEPDVAPCVQRPVDVVFLLD
GSERLGMRNFQHVREFVSNVADRLGLARGRADRMRARLALAEFGKEDEHSLAFPLTHDRA
VITDGIARLSYLDSSSSVGPAIIHAINNILGKGNARQTRRFAEILFVFITDGITDSKVLE
EAVGAMRGAQVVSTVIAPGNDVDQEVLTKLAMNDQEAIFKVKDFSDLSRSGLFDRFIQWV
C
NT seq 3066 nt   +upstreamnt  +downstreamnt
atggggatgatttcagggctcatttttctgtgcatgctccaatctgcaatcactcggaca
gatccattcccacctgcccccataagacctgaaggttgtgagaccgggataatcgactgt
cccatcaaggtgtttttcaccatcgacacctcagagaccatcgctttgcaggagtccccg
cctggtagcctggtgaaaaaaatccaagagttcactaagatctttgcccagaggctggat
gatgaggagtacaaaggccaagtccatatcacctggtccataggaggcctgcatttctcc
cagacccaggtggtcttctgtgatttaacaaccagggagaccttcatcaggaacatcact
aacatcaaatacctgggcaaaggcacctacaccgactgcgctttgaaacagatggcctcc
aaactgacccggcaccactgggacacgaaggtcgtcctcttctctgtggtcatcactgat
ggtcacgtgacaggaagtccatgtggggggataaaggtgatggcggaaagtgccagggac
aaagggatccagattttctcagtggcagcgtccagaatgatcgatgaaatagggatgaga
gagatcgccagctctcccattgaactttaccgtgacgactacatagtcgtggacactctc
agtgggaaaccagaaataaagactgattctattgatcgtatcataaaagccatgaaatat
caagcatatttacagtgttaccaacaaaaatgcctcgagactcctgggccacctggtcca
aaagggcctccaggtctaaaaggtacaaaaggagccagcggtcaacctgggccaaaaggt
gcaaagggtagacagggtgaccctgggattgaaggtccaatcggacgacctggtccaaag
ggagagtctggtttgaaaggtgacaagggtgaaactggaacaataggcgcaaagggtgtg
gcaggagtacctggcaggaatggaactgatggacagaagggtaaaatgggacgaatcgga
gctcctggttgcaaaggtgatccaggtgacaagggaccagatggctaccacggagaagtt
ggtgaaaccgggccacgtggtgacaaaggagaaaagggtgacgatggccaccctggaaag
tcggggccccctggtccggagggtgaccaaggaccaaagggtgaaagaggaaatccagga
attccaggaccaccgggacaaaagggatctccgggagctccaggtggacctggaccacca
ggtgaagagggaagaagaggagaccctggaataaagggagcacaagggcctgatgggtta
aaaggagagaagggagaacgagggccacaaggaggcagaggtcggcctggggaggaggga
ttcaagggtgcaaagggtgatcaaggactaccaggcccgaggggtcagccaggagaagca
gggggccctggagcaaatggcaccaggggaaatccaggagatcctggaccaaggggagac
actggaccccctggaccaaagggagacaaaggaagaacaggattcagctactccgggcca
agaggacccactggcgacaaaggtaacccaggcaggagaggacccagggggggcagaggt
gattgtggtgccaaaggagaacctggaaacaaaggtccaacaggagatcctggtaagcca
ggtgagccgggtgagccaggagagagaggacctaggggaaatcctggacctgatggggat
cctggaccaatgggtgatcctgggctcactgactgtgatgtcatgacttacatcagggag
acatgtggttgctgtgactgtgagaagcgctgtggagctctggacattgtatttgtaatt
gatagctcagagagcgttgggctgacaaacttcaccctggaaaagaactttgttatcaac
accatcaacaggctgggctctatggccagcgaccctgcgtcaccaaccggcacaagagtc
ggagttgtacagtacagtcacaacgggacatttgaggccattcatctcgatgacccaaac
ataaactccatgtctgcctttaagacggcagtgaagaatctaaagtggattgctgggggc
accttcacaccatcggctctaaagtttgcctatgataccctcatcagggacagcaagaga
gctcgagcacgagtatccgtggtggtgatcacagatggccgctatgactcgcgtgatgat
gaggatctgctcaattatctttgtagggacagcaatgtggtggtgaatgccattggggtt
ggtgatatgtttcagaagacacaggacaatgaggtcctggggtcgatagcgtgcaacaac
aagggccgtgtgtctggtttgatgcgttatgctgacttggtagctgaggacttcatagaa
aaaatggagactgtgctctgtccagagccagtgattatgtgccctgatctcccctgtaaa
actgaacctgatgtagctccatgtgtccagcggccagtggatgtggtatttctactagat
ggctcagagcgcctcgggatgaggaacttccagcatgtccgtgaatttgtgagcaatgtg
gcagacagactgggactagcccggggcagggctgatcgtatgcgagcgcgcctagcacta
gctgagtttggcaaggaggatgagcacagcctagccttccctctaacacatgaccgtgct
gtcatcactgacggcatagcacgcttatcttacctagattcctcctcaagtgtggggcct
gccatcatccacgccatcaacaacatcttgggtaaagggaatgctcgccagacgagacgc
tttgcagagattttatttgttttcatcacagatggaatcactgacagtaaggtcctggag
gaggcagttggagcgatgcgtggggcacaggttgtctccacagtgatagcccctggaaat
gacgttgaccaagaagtccttacgaagctggctatgaatgaccaggaagccatctttaaa
gtaaaagacttctctgatctgtcccggtctggtttgtttgaccgtttcattcagtgggta
tgttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (63)   

Download RDF
DBGET integrated database retrieval system