KEGG   Lates calcarifer (barramundi perch): 108901481
Entry
108901481         CDS       T04895                                 
Name
(RefSeq) LOW QUALITY PROTEIN: retinoblastoma-like protein 1
  KO
K04681  retinoblastoma-like protein 1
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04110  Cell cycle
lcf04218  Cellular senescence
lcf04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04350 TGF-beta signaling pathway
    108901481
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    108901481
   04218 Cellular senescence
    108901481
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lcf03000]
    108901481
Transcription factors [BR:lcf03000]
 Eukaryotic type
  Other transcription factors
   Pocket domain Rb
    108901481
SSDB
Motif
Pfam: RB_A RB_B DUF3452 TFIIB Rb_C
Other DBs
NCBI-GeneID: 108901481
NCBI-ProteinID: XP_018558470
Position
LG12:1647173..1658660
AA seq 1059 aa
MRGEESSDSESGRMEESSVRRSLETLCQELNMDEQTAAAAMENFTAIWNTYTLEGEVVHW
LACSLYAACRKGSTPTVGKGLMEGNCVSLTRILRSSKLSLIQFFSKMRKWADMSNLSQDF
RLRMDRLERNFEVSTVIFRKFEPIFMDMFQNPQGGEPPRQPRSRKHRRLPCHISDVFKFC
WTLFVYTKGNFRMIGDDLVNSYHLLLCCLDLVFGNALLCSNRKDLINPTFRGLPALYRAD
GHVSGDEPPPCVLERLCELHDGLVVEAKGIKQHYFKPYIQKLFQRQILKGNEELLTEMLD
PQNFIDNNKAINREYEEYVLTVGDFDERVFLGADADEEIGTPRKIVQEPSASQTTNHSQL
QQHVEKSGSLAPSTPLTGRVYLKEKDLLVTPVSSATQSVSRLQSMVAGLRTAPSDHLMQI
FKSCSRDPSESILTRVKTLGQTFKEHYTNDSEDTPGSHIDFAENRLKLAEILYYKILENV
MAQETKRLQGKDMSVLLEQDIFHCSLMACCLEVVLFSYSSQRTFPWIITVFKLAPFYFFK
VIEVFIRSEEGLSRDMVKHLNSIEEQVLESRAWTSDSALWSALEAAGNKVPTVEEVNFSS
SLDSSSGSGSISGVQPHLPLVALSPIIHPRIREFRSGLGSARKDVPPSPLSVHDRYSSPA
AGSAKRRLFGDDPPNLSLSPVLSPAKRLTFGSSNTLKIGGQGSQTTVVSIPLQGVSNDRT
ITLIPVQPCGDSSGAVTAQFLLTASPSRPTPAPVTSDPQTGNGRPRRTGSLALFFRKVYH
LASVRLRDLCVKLDISSELRGKIWTCFEHSLVNCTDLMKDRHLDQLLLCSIYIISKITKE
THTFQDIMKCYRSQPQAGSHVYRSVLLRHTLREQVADENMEVDPVSGGESAEKTNPVSGE
SNSSQSGEEERGDLIQFYNTVFILKMKSFALRYATHDNRVDAPPLSPFPSVRAQPLSPRR
VSQRHSLYVSPHKNSAGCLTPNSYTYRINSSPSKELSDINRMIRQGCVSRKRAFTMEGDV
MMSPAACDSPSKRACPENGSSPDVLLKRLQDVVSERQSR
NT seq 3180 nt   +upstreamnt  +downstreamnt
atgcggggcgaagagtcgtcggattcggagtccgggaggatggaggagagttcagtccgg
aggagtttggagacgttgtgtcaggagctgaacatggacgaacagacggccgccgcagcc
atggagaacttcactgccatatggaatacatataccctggagggggaagtcgtccactgg
ctcgcctgttcgctgtacgccgcctgcaggaagggatcgaccccgaccgtgggtaaaggg
ctgatggagggaaactgtgtctccctcaccaggatccttcgatcttccaaactcagtctg
atccagttcttctctaagatgaggaagtgggccgacatgtccaacctgtcgcaggacttc
aggctacgcatggaccggctggagcgcaactttgaggtctccacggtgatctttcgcaag
ttcgagcccatcttcatggacatgtttcagaacccgcagggaggcgagccgccacggcag
ccacgcagcaggaaacacaggcggcttccctgtcacatcagtgatgtgttcaagttctgc
tggacgctgttcgtctacaccaaaggtaacttccgaatgatcggcgatgacctggtgaac
tcgtaccacctgctgctctgctgtctggacctggtgtttggaaacgctctgctctgctcc
aacaggaaggatctgatcaacccaacgttcagaggtcttcccgctctgtaccgagctgat
ggtcacgtctcaggtgacgagcctcctccctgtgtgttggagaggctgtgtgagctgcac
gacggactggtggtggaggcgaaaggcatcaaacagcactacttcaaaccgtacatacag
aaactgtttcagagacagatcctgaaaggaaatgaggagcttttaacagaaatgttggat
cctcagaacttcatagacaacaataaagccataaacagggagtacgaggagtacgtgctg
acggtcggagacttcgacgaacgagtgtttctcggagccgatgccgatgaggagatagga
acgccaaggaagatcgttcaggagccgtctgccagccagacgaccaatcacagccagctg
cagcagcacgtagagaagtccggttccctcgccccctccacgcctctgactggacgggtt
tacctgaaggagaaggacctgctcgtcacgcccgtctcctcggcgacgcagagcgtcagc
cggctgcagagcatggtggccgggctgaggacggcgcccagcgaccacctgatgcagata
ttcaagtcgtgctccagagatccgtctgagtccatcctgaccagagtgaagactctggga
caaaccttcaaagaacattacaccaacgactcggaggacacacctggatctcacatagac
tttgcagagaatcgactgaaactggccgagatcctttactacaagatcctggagaacgtc
atggctcaggagaccaaacggctgcagggcaaagacatgagtgtgttgttggagcaggat
atcttccactgctccctgatggcgtgttgtctggaggtggtgttgttctcctacagctcc
cagagaaccttcccatggatcatcaccgtcttcaaactggctccgttctacttcttcaag
gtgatcgaggtgtttatccgctcggaggaaggtctgtccagagacatggtcaaacacctg
aactcgatcgaggagcaggtcctggagagccgagcctggacctcggactcggccctgtgg
agcgccctggaggctgctgggaacaaagtccccacagtggaggaggtgaacttttcctcc
agtctcgactccagctctggttctggttccatcagcggagttcagccccacctgcctctg
gtcgccctctctcccatcatccacccacgaatcagggagttcagatccggtctcggcagc
gcccgaaaagacgttcctccctctcctctgtccgtccacgacaggtacagctctcctgcg
gccggcagcgccaagcgccgtctctttggcgatgaccctccgaacctgagtctgagccca
gtgttgtctccggcgaagaggctgacgttcggctcaagcaacacactgaagatcggaggc
cagggatcccagaccaccgtggtcagcatcccgctgcaaggtgtgagtaacgaccgcacg
atcacgctgatcccggttcagccatgtggcgactcctctggcgctgtcactgctcagttc
ctgctcaccgcctccccgagccgacccacccctgcacctgtgacctccgacccccagaca
ggaaacggtcggccgcgacgcaccggatcgctcgctctgttcttcaggaaggtgtatcac
ctggccagcgtccgtctgagggatctgtgcgtgaagctggacatttcctctgagcttcgt
gggaaaatctggacgtgtttcgaacactctctggtgaactgcaccgatctgatgaaggac
cgacacctcgaccagctgctgctctgcagcatttacatcatatccaagatcacaaaagag
actcacaccttccaggacatcatgaagtgttaccgcagccaaccacaggccggcagccat
gtttaccgcagtgtgttgctgcgtcacactctcagggagcaggtggccgatgaaaacatg
gaggtggatccggtctctggaggagaatctgcggagaaaaccaatccagtctcaggagag
tcaaactccagccaatcaggcgaggaggaacgtggtgacctcatccagttctacaacacc
gtcttcatcctgaagatgaagagcttcgcgctgcgatacgccacccacgacaaccgggtg
gacgctcctcctctgtctccgttcccgtcggtccgggctcagcctctctctcctcgccga
gtctcccagagacactcgctgtacgtctcccctcacaagaactcggcgggatgcctgacg
ccaaactcctacacctacaggatcaacagcagcccgtccaaggagttatcggacatcaac
cggatgatcaggcagggctgtgtgagcaggaagagggccttcaccatggagggcgacgtg
atgatgtcaccggcggcatgtgactcccccagtaagagggcgtgtccggagaacggcagc
agcccggacgtgctgctgaagcggctgcaggacgtcgtgtccgagcggcagagtcgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (32)   

Download RDF
DBGET integrated database retrieval system