KEGG   Lates calcarifer (barramundi perch): 108902774
Entry
108902774         CDS       T04895                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03030  DNA replication
lcf03410  Base excision repair
lcf03420  Nucleotide excision repair
lcf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108902774
   03410 Base excision repair
    108902774
   03420 Nucleotide excision repair
    108902774
   03430 Mismatch repair
    108902774
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lcf03032]
    108902774
   03036 Chromosome and associated proteins [BR:lcf03036]
    108902774
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108902774
DNA replication proteins [BR:lcf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    108902774
  DNA Replication Termination Factors
   ELG1-RFC complex
    108902774
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    108902774
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     108902774
  Check point factors
   HRAD17(Rad24)-RFC complex
    108902774
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_11 AAA_22 AAA_24 RuvB_N AAA_14 DEAD AAA_16 AAA_assoc_2 ResIII DUF815 PhoH DNA_pol3_delta AAA_7 AAA_19 AAA_5 ATPase_2 TIP49 AAA_30 AAA_2 AAA_25 Thioredoxin_6 T2SSE Mg_chelatase Glyco_hydro_57 DUF4119
Other DBs
NCBI-GeneID: 108902774
NCBI-ProteinID: XP_018560321
Position
LG13:complement(1190532..1195017)
AA seq 335 aa
MASTNKAALQTRNLPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVIQQESIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSD
IANILDWSLNKDFTTAYKQILQLKTLKGLALHDILTEIHLLIHRVDFPPAIRIGLLIKLA
DVEHRLASGTDEKIQLSSMVAAFQAVRDLVASEAS
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcttctacaaataaagcggcgttacagaccagaaatttaccatgggttgaaaaatac
agaccacagactctggatgatctgatttcacacaaagatattctaagcaccatccagagg
ttcatcagcgaggacaagcttccccatctcttgttctatggcccccctggaacaggcaaa
acctccaccattcttgcctgtgccaggcagctgtacaaagacaaagagttcaactccatg
gtgctggagctaaatgcatcagatgatagaggtattgatgtggtgcgaggtcctattctg
agttttgccagcacccggaccatcttcaagaagggcttcaagttggtgatactggacgag
gctgatgccatgacccaggatgcccagaatgcattgcggcgagtgattgagaagttcaca
gaaaacactagattctgtctgatctgcaactacctgtccaagatcatcccggccctgcag
tctcgctgcaccaggtttcgcttcggcccgctgtccccggaccagatgatcccccgcctg
gagcatgtgatccagcaggagagtattgacataactccagatggaatgaaggccattgtg
accttatcatcaggtgatatgagaagatcactcaacatactgcagagcaccagtatggcg
tatgggaaggtcacagaggacacagtttacacctgcacaggtcacccactccgctcagac
atagccaacatcctcgactggtctctcaacaaagacttcaccacagcatacaaacaaatc
cttcagctgaagactttgaaaggtttggctctgcacgatatcctcactgagattcatctg
ctcatacacagagtggactttcctccagctattcggattggtctgctcatcaagttggcc
gacgtagaacaccggctcgcctcaggaacagatgagaagatccagctgagctccatggtc
gcagctttccaggcagtgagagacctcgtggccagtgaggcctcctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (29)   
   Pfam (29)   
All databases (52)   

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