KEGG T00681: Lcho

Leptothrix cholodnii: Lcho_2998

Entry

Lcho_2998 CDS T00681

Definition

type I secretion system ATPase

Orthology

K11004

ATP-binding cassette, subfamily B, bacterial HlyB/CyaB

Organism

lch Leptothrix cholodnii

Pathway

lch02010	ABC transporters
lch03070	Bacterial secretion system

Class

Environmental Information Processing; Membrane transport; ABC transporters [PATH:lch02010]
Environmental Information Processing; Membrane transport; Bacterial secretion system [PATH:lch03070]

SSDB

Motif

Pfam:

ABC_membrane ABC_tran Peptidase_C39 AAA_21 AAA_17 ABC_ATPase SMC_N AAA_29 AAA_18 AAA_16 AAA_25 AAA_10 AAA_22 NB-ARC DUF87 MobB PRK DUF258 G-alpha

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

3304005..3306266

AA seq 753 aa
MQPAQRHPDPDPAPVAPKPTVGHRADASGLPALCLLARLHHLGADAASLRHQLGKSPNEV
FTTDDLLVAAQHLGLKAKRLASSAERLPLVPLPALARLRIDTGDGSAVERWVLLAQCDGQ
RVLFQDAAAADGGRPTIEPLATFAAQWSGELIVASSRASVAGDLARFDFSWFIPSLVKHR
RLLGEVLLVSLFLQLFALVSPLFFQVVMDKVLVHRGLSTLNVLMVGLVVVVLFESLLTLL
RSYVFTHTTSRIDVELGARLFRHLLALPLSYFQARRVGDSVARVRELENIRSFLTGSALT
LVLDLLFSGVFIAVMLLYSVPLTLVVLASVPIYLGLSLSVVPLLRARLNEKFARGAENQA
LLVETLTGIQTVKASALEPALARRWDGQLAAYVSASLRTQTLANAAHEGVNLTAKLVNVA
TLWLGAQLVMDGALTVGMFVAFNMFAGRVAQPIMRLAQMWTDFQQTGIAMQRLGDILDTR
TEVPPSSAAQLPALQGRITLDGVSFRYRPDAPLVLQGLSLEIAPGEVIGIVGRSGSGKST
LTKLIQRLHVPEQGRVKVDGIDIALIDAAQLRRQVGVVLQENWLFNRSIRDNIAIADPGA
PLEAVLAVAQLAGAHEFISQLPEGYDTLVGEQGASLSGGQRQRIAIARALFGNPRILIFD
EATSALDYESEAILQRHMAMICRGRTVIIIAHRLSSVRGAHRIIAMDQGRIVEAGSHEVL
LRTDGLYAQLWRLQAGGPATGPATPAGQQEPRP

NT seq 2262 nt +upstreamnt +downstreamnt
atgcagcccgcccagcgccatcccgatcccgatcccgcgcccgtcgcgccaaaacccacg
gtgggccaccgcgccgatgccagcggcctgccggccctgtgcctgctcgctcgcctgcac
cacctgggcgccgacgccgccagcctgcgtcaccagttgggcaagtcaccgaacgaggta
ttcaccaccgacgacctgctggtggcggcccagcacctgggcctcaaagccaagcgcctg
gccagcagcgccgagcgcctgccgctggtgccgctgccggcgctggcgcgcctgcgcatc
gacaccggtgacggctcagccgtcgaacgctgggtgctgctggcccagtgcgacggccag
cgtgtgctgttccaggatgccgctgcggccgacggcggccgccccacgatcgagccgctg
gccaccttcgccgcgcaatggagcggcgaactgatcgtcgccagcagccgcgccagcgtc
gccggtgatctcgccaggttcgacttcagctggttcatccccagcctggtcaagcaccgc
cgcctgctcggcgaagtgctgctggtgtcgctgttcctgcagctgtttgcgctggtctcg
ccgctgttcttccaggtcgtgatggacaaggtgctggtgcaccgggggctttccacgctc
aacgtgctgatggtcgggctggtggtcgtggtgctgttcgagagcctgctcacgctcttg
cgcagctacgtcttcacccacaccaccagccgcatcgacgtcgagctgggcgcgcggctg
ttccggcatctgctggcgctgcccttgtcttacttccaggcccgccgggtcggcgattcg
gtcgcgcgtgtcagggagctggaaaacatccgcagcttcctgaccggcagcgcgctgacg
ctcgtgctcgacctgctgttctcgggggtcttcatcgccgtgatgctgctctacagcgtg
ccgctgacgctggtcgtgctggccagcgtgccgatctacctgggcctgagcctgagcgtg
gtgccgctgctgcgcgcccgattgaacgagaagttcgcccgcggcgccgagaaccaggcg
ctgctggtcgagactctcaccggcatccagaccgtcaaggccagcgcgctcgaacccgcc
ctggcgcggcgctgggacggccagctcgccgcctacgtcagcgcgagcctgcgcacccag
accctggccaacgccgcgcacgaaggcgtcaacctcaccgccaagctcgtcaacgtggcc
acgctgtggctcggcgcccagctggtgatggacggcgcgctgacggtgggcatgttcgtc
gcgttcaacatgttcgccggccgggtggcgcagcccatcatgcgcctggcgcagatgtgg
accgacttccagcagaccggcattgcgatgcagcgcctgggcgacatcctcgacacccgc
accgaggtgccaccgagcagcgccgcgcaactgcccgcgctgcaaggccgcatcacgctc
gacggcgtgagcttccgctaccgccccgacgcgccgctggtactgcagggcctgagcctg
gagatcgcgcccggcgaggtgatcggcatcgtcgggcgctccggctcgggcaagagcacg
ctgaccaagctgatccagcgcctgcacgtgcccgaacagggccgcgtcaaggtcgacggc
atcgacatcgcgctgatcgacgccgcccagctgcgccgccaggtgggggtggtgctgcag
gagaactggctgttcaaccgcagtatccgcgacaacatcgccatcgccgaccccggcgcg
ccgctcgaggcggtgctggcggtggcgcagctggccggggcgcacgagttcatcagccag
ctgcccgaaggctacgacacgttggtgggtgaacaaggcgccagcctgtcgggcggccaa
cgccagcgcatcgccatcgcccgcgcgctgttcggcaacccgcgcatcctgatcttcgac
gaagccaccagcgcgctcgactacgagagcgaggcgatcctgcagcgccacatggcgatg
atctgccgcggccgcaccgtgatcatcattgcgcaccgcctgtcgagcgtgcgcggcgcg
caccgcatcatcgcgatggaccagggccgcatcgtcgaggccggcagccatgaggtgctg
ctgcgtactgacgggctgtatgcgcagctgtggcggctgcaggcgggcgggcccgcaaca
ggccccgccactcccgcaggccaacaggagccacggccatga

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-LCH (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (19)   
   Pfam (19)   
All databases (29)   

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