KEGG   Leptothrix cholodnii: Lcho_3494Help
Entry
Lcho_3494         CDS       T00681                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
lch  Leptothrix cholodnii
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:lch00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Lcho_3494
Enzymes [BR:lch01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Lcho_3494
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Lcho_3494
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
complement(3907089..3907919)
Genome map
AA seq 276 aa AA seqDB search
MPELPEVEVTRLGLVDRIGGATVRALQLGKPLRWPIGVAPQQLAGQRIGELARRGKYIWM
PLQDGSTPAGGLLWHLGMSGSLRFEAQLPPPGPHDHVELVTDRGSLRLTDPRRFGAVVWS
PSLQAGCAARLLGGLGVEPLEDGFTASVLHQGLRGRRVAIKQALLAGDIVVGVGNIYCSE
ALFVAGIDPRLAAQRLSLARCERLVQAIRQVLRQALMAGGSTLRDFRDAHGMGGAFQLQA
QVYDRADQPCRRCGALVRRIVQGQRATYFCPVCQRR
NT seq 831 nt NT seq  +upstreamnt  +downstreamnt
atgcctgaattgccggaagtcgaagtcacgcgcctcggtctggtcgaccgcatcggcggc
gccacggtgcgcgccctgcagctgggcaagccgctgcgctggccgatcggcgtggcgccg
cagcagctggcgggccagcgcatcggcgagctggcgcggcgcggcaagtacatctggatg
ccgctgcaggacggcagcacgccggccggtggcctgctctggcatctgggcatgtcgggc
tcgctgcgcttcgaggcgcagctgccgccgcccggcccgcacgatcacgtcgagctggtc
accgaccgcggcagcctgcgcctgaccgacccgcgccgcttcggcgcagtggtctggtcg
ccgtcgctccaggccggctgcgccgccaggctgctcggcgggctgggtgtcgagccgctc
gaggacggcttcaccgccagcgtgctgcaccagggtctgcgcgggcgtcgggtggcgatc
aagcaggcgctgctggcgggcgacatcgtcgtcggcgtgggcaacatctattgttccgag
gcgctgttcgtggccggcatcgatccccgactggcggcgcagcgcctgagcctggcgcgc
tgcgagcggctggtccaggcgatccgccaagtgctgcgccaggcgctgatggcgggcggt
tcgacgctgcgcgacttccgcgatgcccacggcatgggcggcgcattccagctccaggcg
caggtctacgatcgcgccgatcagccgtgccggcgctgcggcgcgctcgtgcgccgcatc
gtccagggccagcgtgcaacatatttctgtccggtttgccagcgccgttga

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