KEGG   Lacticaseibacillus paracasei LOCK919: LOCK919_2736
Entry
LOCK919_2736      CDS       T02729                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
lcl  Lacticaseibacillus paracasei LOCK919
Pathway
lcl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lcl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LOCK919_2736
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lcl03021]
    LOCK919_2736
   03400 DNA repair and recombination proteins [BR:lcl03400]
    LOCK919_2736
Enzymes [BR:lcl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LOCK919_2736
Transcription machinery [BR:lcl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LOCK919_2736
DNA repair and recombination proteins [BR:lcl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LOCK919_2736
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C DUF4090
Other DBs
NCBI-ProteinID: AGP69414
Position
complement(2675642..2679304)
AA seq 1220 aa
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVIDPGDTPMEKKQLLTEREYREKREEYGQTFNAKMGAEAIKELLQ
DVELDKEVAELKEDLKSAQGQKRTRAIRRLDILDAFKESGNDPAWMVMDTIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKFYQCGVPRE
MALELFKPFVMRELVKRDMASNIKNARRKIDRQDDDVWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLVCEAYNADFDGDQMAIHVPLSDEAMAEARMLMLAAHHIL
APKDGKPIVTPSQDVVLGNYYLTMEQKGREGEGMIFKDTNEVLMALQNGYVHLHSRIGIA
TNSFTDKPFTDDQKQKIMVTSVGKAIFNEIMPKDFPYLNEPTQDNIVNGVPDKYFIDKGE
DISDYLEDAPLIDPFKKGFLSDIIAQVFKVYKVQRTSDLLDDMKTLGYTQSTNSGLTVGI
ADITNLKEKPEIVEAAHKKVATVSKQFRRGLITDEERHDRVIQIWNDAKDDIQQKLVDSF
DPNNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVISNFREGLSVMEMFMST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLVVSAIREGNEMIEPLY
DRLVGRFTMKDVLDPKSGEVLVKRNTLMDEDTAQMIVDAGVESVTIRSVFTCNTKHGVCQ
KCYGRNMATGEQVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVQEI
FEARNPKGEAVITEVTGEITAIDENPAEHTREITVKGETDTRTYSVPYASSVAVAEGDHI
NRGERLTGGSIDPKQLIKVRDVMATENYLLSEVQKVYRMQGVDIGDKHVEVMVRQMLRKI
RVMDPGDTNILPGTLLDIADFKEKNTQAIISGGIPATGRPVLLGITKASLETNSFLSAAS
FQETTRVLTDASIRGKNDPLIGLKENVIIGKIIPAGTGMATYRHEEPKSVGTVSDSVYSI
SDIEKQMKAKDGQQGDTDKK
NT seq 3663 nt   +upstreamnt  +downstreamnt
ttgattgatgtcaataagtttgaaagtatgcaaatcggcttagcctcgccagataaaatc
cgtagctggtcctatggggaagttaaaaaacctgagaccatcaactaccggacgttaaaa
cctgagcgggacggcttgttcgatgaacgcatcttcggaccgaccaaggactgggaatgt
gcctgtggcaagtacaagcggattcgttataagggaatcgtttgtgatcgctgcggtgtt
gaagttactcgttccaaggttcgccgtgagcggatgggtcatatcgaactagccgcaccg
gttacccacatctggtacttcaagggcatcccaagtcggatgggtctggtactggacatg
tcaccgcggtcactcgaagagatcatttattttgcgtcctacgttgtgatcgatcctggc
gatacgccgatggagaaaaagcagctcctgaccgaacgtgaatatcgtgaaaaacgcgaa
gaatacggtcaaaccttcaatgccaagatgggtgctgaagccatcaaggaattgttgcag
gatgttgagcttgataaagaagttgccgaattaaaggaagacttgaagtcagcccaaggc
caaaagcggacccgtgcgattcgccggttggatattctggatgccttcaaggaatccggt
aatgatccagcttggatggtcatggacacgatcccagttatcccaccggatctgcggcca
atggttcaacttgaaggtggccgttttgccacttccgatctgaacgacttgtatcgacgg
gttatcaaccgaaataatcggttgaagcgcctgcttgatctcaatgcgccaagtatcatt
gttcaaaacgaaaagcggatgctgcaggaagcggttgatgctttgattgataatggtcgt
cgtggccgtccggttacggggccaggtaatcgcccgctcaagtccctgtcacacatgctg
aaagggaagcaaggccggttccgtcagaacttgcttggtaagcgtgtcgattactccggc
cgttccgttattgatgtcggcccatggctgaagttctatcaatgcggtgtaccacgtgaa
atggcattggaactgttcaagccatttgtgatgcgtgaattggttaagcgcgacatggct
agcaacatcaagaatgctcgtcgcaagattgatcgccaagatgatgatgtttgggacgtg
cttgaagatgtcatcaaggaacgtccagtgctgttgaaccgtgcacctaccttgcatcga
cttgggattcaggcatttgaacctgtccttgttgatgggaagtccatccggttgcacccg
ctggtctgcgaagcttataacgctgactttgatggggaccagatggcgatccatgtaccg
ctatctgacgaagcgatggctgaagcacggatgctgatgttggctgcacaccatattttg
gcaccaaaagatggcaagccaatcgttacgccatcacaggacgttgtgctgggtaactac
tacctgaccatggaacaaaaaggccgcgaaggtgaaggcatgatctttaaggacaccaac
gaagtgttgatggccttgcaaaacggttatgtccacttgcacagccgcatcgggattgcg
actaattcctttacggacaagccgtttaccgatgatcagaaacaaaagatcatggtcacc
agtgttggtaaggcgatctttaacgagattatgccgaaagacttcccatatttgaatgaa
ccgacgcaggataacatcgtcaatggtgtgccggataagtatttcatcgataagggtgaa
gacatcagcgactaccttgaagatgcaccgttaatcgatccattcaagaaaggcttcctg
tctgacatcattgcgcaagtcttcaaggtctataaagttcaacggaccagtgacttgctg
gatgatatgaagactttgggctatacgcagtccactaactctggcttgactgtcgggatc
gcggacattactaacttgaaggaaaagcctgaaattgtcgaagctgcccataagaaggtt
gccactgtttccaagcagttccgtcgtgggttgattaccgacgaggaacggcatgatcgg
gttatccagatctggaatgatgccaaagatgatattcagcagaagctggttgattcgttt
gacccgaacaacccaatttcgatgatgtccgattcaggtgctcgtggtaacatttctaac
tttacacagcttgccggcatgcgtggtctgatggctgcgccaaacggtgggatgatggaa
gtgcctgttatctcgaacttccgtgagggcctgtccgtcatggaaatgttcatgtcaact
cacggtgctcgtaaagggatgaccgatacggcgctgaagacggctgattcaggttacctg
actcggcggctggttgatgttgcacaggatgtcattgttcgtgaagaggactgcggtacc
gaccgtggcttagttgtcagtgctatccgtgaaggtaatgaaatgatcgaaccgctgtat
gatcgactggttggtcgtttcaccatgaaggatgtgctggatccgaagagtggcgaagta
ctcgtcaagcgcaataccttgatggacgaagatactgctcagatgatcgtggatgccggg
gttgaatccgtcacgatccgttcggtcttcacttgcaacaccaaacatggtgtctgccag
aagtgctacggtcgtaacatggccactggcgaacaagttgaagtcggcgaagctgtcggg
actgttgctgcgcaatctatcggtgaacctggtacccagctgaccatgcggaacttccat
actggcggtgttgccggtggcgaagatattacgcaaggactgcctcgtgttcaggaaatc
tttgaagctcgtaaccctaaaggtgaagctgtgattacggaagtgaccggtgaaattacg
gcgattgacgaaaatccagctgagcacacacgggaaatcacggtcaaaggtgaaaccgac
acccggacttacagcgtgccatatgcttccagtgtggcagttgctgaaggcgaccacatt
aatcgtggcgaacgcctgactggtggttcgattgatcctaagcaattgattaaagtgcgc
gatgtcatggccactgaaaattacctgctttctgaagttcagaaagtttaccgtatgcaa
ggtgttgatatcggcgataagcacgttgaagtgatggtccgccagatgttgcgcaagatc
cgggttatggatccaggcgacaccaacatcttgccaggaaccttactcgatattgctgac
tttaaggaaaagaatacgcaggcaattatcagtggcggtatccctgctactggccggcca
gttctactggggatcaccaaggcttccttggagaccaacagtttcctgtctgccgcttcc
ttccaggaaacgacacgggtattgaccgatgcctcgattcgcggcaagaacgatccgctg
atcggtttgaaggaaaatgtcatcattgggaagatcattccggctggtaccgggatggca
acgtatcgacacgaagaaccaaagagtgtcggcaccgtttccgacagtgtctattcgatt
tcagacatcgaaaagcaaatgaaagcaaaagacggccagcaaggcgatacggacaaaaag
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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