KEGG   Latimeria chalumnae (coelacanth): 102355942
Entry
102355942         CDS       T02913                                 
Symbol
YTHDC2
Name
(RefSeq) YTH domain containing 2
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
lcm  Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lcm03041]
    102355942 (YTHDC2)
Enzymes [BR:lcm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102355942 (YTHDC2)
Spliceosome [BR:lcm03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    102355942 (YTHDC2)
SSDB
Motif
Pfam: YTH HA2_C Helicase_C R3H OB_NTP_bind DEAD Ank_2 HA2_N Ank AAA_19 nSTAND3 AAA_22 Ank_4 AAA_23 ATPase Spore_coat_CotO AAA_7 T2SSE FtsK_SpoIIIE SRP54 AAA_29 Sigma54_activat PhoH
Other DBs
NCBI-GeneID: 102355942
NCBI-ProteinID: XP_006000757
Ensembl: ENSLACG00000010991
UniProt: H3AS52
Position
Un
AA seq 1429 aa
MSRPSSVSPRPGSAQSGSTKGKGLKDVRIDEEVKIAVNIALERFRYSDQKEMEFPSSLTS
TERAFIHRLSQSLGLISRSKGKGANRFLTIKKKEVSEMSRAVMACNLTHNTKHAIRSLIQ
RFPVTNKERTDLLPKTERGNMLAVEAENNREMNKTSGRLNNGIPQVPPRRGDSEYDFFRQ
SLPVYEKHEEIVKIIKSNKVILIVGETGSGKTTQIPQFILDDCYKNSIPCRIFCTQPRRL
AAIAVAERVAAERGEKIGQTIGYQIRLESRVSPRTLLTFCTNGVLLRTLMAGDSTLSTVT
HVIVDEVHERDRFSDFLLTKLRDVLQKHPSLKLILSSAALDVNLFMKYFSGCPVIYIQGR
PFEVKELFLEDILRSTNYTNKEMQKYKKEKQREEQQQTTLTEWYKVQDSNSRSEPQRQRT
VPNVTEEYDLLDDGGDSVFSQLTEKDANSLEPWLIKEMDACLSDIWLHRDVDAFAQLFHL
ILSENVSVDYRHSETSATPLMVAAGRGFLSQVEQLISMGASINIKASNSWTALDWAKHFG
QAEVVELLESYLISLEAGHLDESTLIQADCGELSAEDRELLKIYHHSFDDEKVDLDLIMH
LLYSICQSSDDGAILIFLPGYDEIVGLRDRILYDDRRFADSSHRYQVFMLHSNMQTTDQK
KVLKPPPLGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNHVTMLKMVWVSKA
SAIQRKGRAGRCRPGICFHLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLAPVKSPIA
DFLAKAPEPPPTLIVKNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVL
KCLDPILTIACTLAYRDPFVLPSQASQKRASMLCRKRFTAGTFSDHMALLRAFQAWQKAR
SDGWERAFCEKNFLSQATLEIIIAMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVV
KAALVAGMYPSLIHVDRENVMLTGLKERKVRLHPTSVLSQPQYKKIPPTNGQAAAIQALP
TDWFIYDEMTRAHRIANVRCCSAVTAVTVAIFAGPARLPSNALQEPSSLKVDGVTNDSSD
SEMEDRSTANLATLKLDEWLNFKLDPEAASMLLQLRQKWHSLFLRRMRAPSKPWSQVDEA
TIRAIITVLSTEEQAAGLQQPSGIGQRPRPMSSEELPITSSWRSNSSRKSSAETEFSDYS
CSADRIQVKSPTPVFLQQQRYKDQGLLHPKRNCEERSDQSSVKSTDSSNYPSPCASPSPP
SSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSVVY
LVFSVQGSGHFQGFARMASEIGRERSQEWGSTGLGGVFRVEWIRKESLPFQFAHHLLNPW
NDNKKVQISRDGQELEPQAGEQLLQLWERIPLGEKTQQTDLKHAMLVNV
NT seq 4290 nt   +upstreamnt  +downstreamnt
atgtcccgcccaagcagtgtttctccaaggcctggcagtgcccagtcaggctccactaaa
ggtaaaggattgaaagatgtccggattgacgaagaagtgaagattgctgttaacattgca
cttgagagattccgatatagtgaccaaaaagaaatggagtttccatcttccctgacaagc
acagaaagggcatttatccatcgcctcagccaatcccttggactaatctctagaagcaaa
ggaaagggagcaaatcgctttctaactataaagaagaaagaagtatctgagatgtcacgg
gctgtgatggcctgtaatttaactcacaatacaaagcatgctatacggagtctgatacaa
cgctttcctgtaactaataaggagcgcactgacctactgccaaaaaccgagcgtggtaat
atgcttgcagttgaagcagagaacaaccgagaaatgaataagacgagtgggcgacttaac
aatggcattcctcaagtaccccccagaagaggagattctgaatatgatttctttaggcag
tctctgccagtgtatgaaaaacatgaggaaatagtcaagattattaaatcaaataaggtg
attttgatagtaggagaaactggatctggaaagactactcaaattccccagttcatactg
gatgattgttacaagaacagtattccatgccgcatcttttgtactcagccaagacgtctg
gcagccattgcagtggcagaaagggttgctgcagaaaggggtgagaagattggacagacg
attggctatcagattcgactggaaagcagggtttctccaaggacgcttctcactttctgc
actaatggggtgcttcttcgaactttgatggcaggggacagtactctttcaactgtgacg
catgtgattgtggatgaagtacatgagagagatcgcttcagtgacttcttgctgaccaaa
ctgagagatgtcttacagaaacatccttctctcaagttgattctctccagtgctgcctta
gatgttaatctgtttatgaaatactttagtggctgtcctgtcatttatattcaggggagg
ccgtttgaagtgaaggagctgtttctagaagacatcttgcgtagcactaattacacaaac
aaagaaatgcagaagtacaaaaaggagaagcagcgagaggagcagcagcaaaccaccctg
actgaatggtacaaggttcaggacagcaattccagatctgagcctcagagacagaggact
gtaccaaatgtgaccgaggaatatgacttgctggatgatgggggtgacagtgtgttcagt
cagttgactgaaaaagatgcaaattcccttgaaccatggctaataaaggaaatggatgct
tgtctgtccgatatatggttgcacagagatgttgatgcttttgcacagctctttcatcta
atcctaagtgaaaatgttagcgttgactacaggcacagtgaaaccagtgcaactccacta
atggttgcagcaggcaggggtttccttagtcaagtggaacagctcattagtatgggagcc
agtatcaatattaaagcatcaaacagctggacagcactggattgggctaaacattttgga
caggctgaggttgtcgagctcttggaatcttatcttatctcactagaggctggacatctg
gatgaaagcaccttaatacaggcagactgtggtgagctgagtgcagaggaccgagaactg
ctaaagatttatcatcacagctttgatgatgaaaaagtggacctggacctgattatgcat
cttctttacagtatctgtcagagttctgatgatggggcaattttgattttccttcctggg
tatgatgaaattgtgggactccgagatcggatcttatatgatgatagacgatttgcagat
agctctcataggtatcaggtttttatgcttcattcaaatatgcagacaactgaccagaag
aaggttctgaaaccaccaccgttgggagttcgcaaaataattctttcaactaacattgca
gaaaccagtatcacagtcaacgatgtggtctttgttattgattcaggcaaagtgaaggag
aaatcctttgatgccctaaaccacgttaccatgctaaagatggtgtgggtttcaaaagct
agtgccatccagagaaaaggaagagcaggtcgctgtcggcctggtatctgttttcaccta
ttcagcaggttacggtttcagaacatgttagagttccagactccagagctcctgcggatg
ccactacaggagctttgtttgcacacaaaattgctggctccagtcaaaagtcccattgca
gacttcctggcaaaagctccagagccccctccaactcttattgtcaagaatgctgtgcag
atgctcaagacaatagatgcaatggatacctgggaagatctgactgaactaggatatcac
ctcgcagacctaccagtagagcctcaccttggtaagatggtgctgtgtgctgtagttctg
aagtgccttgaccccattctcaccattgcctgcactctggcgtatcgagatccctttgtt
ctaccatcccaggcatcccagaagcgagcatctatgctgtgcagaaagcggtttacagct
ggaacattcagtgatcacatggcccttctcagggcttttcaggcctggcaaaaagctcgc
agtgatggctgggaaagagctttctgtgagaaaaactttctttcacaggccacgctggag
atcatcatagcaatgaggacacagcttcttggccagctcagagcgtcaggttttgttcga
gctcgtggaggaggtgacatcagagatgtaaacactaactctgagaactgggctgtagtg
aaagctgccttagtagctggaatgtaccctagtttaatccacgtggacagagagaacgtc
atgcttactggtctgaaagaaaggaaagtccgcttacatcctacctccgtacttagccag
cctcagtataagaagattccaccaacaaatggacaagcagctgctattcaggctttgcct
acagactggtttatttatgatgaaatgaccagagcgcacagaattgccaatgtccggtgt
tgttctgctgtcacagcggtcacggtggccatatttgctggacctgccaggcttccaagt
aatgcgttacaggagccttcatcacttaaagtggatggtgttactaatgacagcagtgat
agtgagatggaggacagaagcactgctaatttggcaactttgaagttagacgaatggctg
aattttaaattggatcctgaggctgccagtatgcttttacaattgaggcagaaatggcat
agtttgtttttacgtcgaatgcgggccccatccaagccttggtcccaggtggatgaagcg
actattagggcaatcataactgttctgagcacggaagaacaggctgcagggctccagcag
ccctctgggattggacaaagaccaagacctatgtcttcagaagaactccccataacatct
tcatggcgctcaaacagcagcaggaagagttcagcagagacagaattttctgactattct
tgcagtgctgacagaattcaggtgaaatctccaactccagtcttcctccaacaacagagg
tacaaagatcagggtttgctacatcccaaaaggaattgtgaggagaggtcagaccagtct
tctgtgaaatcaaccgacagcagcaactaccccagcccttgcgctagtccttctccccca
tcctctgggaagggctccaaatctccatcaccaagaccaaacatgcctgtgcgctacttc
ataatgaagagcagtaacctgcggaacctggagatttctcaacagaaaggcatctggtcc
acaacacccagtaatgagcgtaagctgaaccgggccttctgggagagcagtgtggtttac
ttggtgttttctgtgcaaggatctggacacttccaggggtttgctagaatggcctcagag
attggacgtgaaagaagccaggaatgggggtccacaggcctgggaggtgtgttcagggtg
gaatggatcagaaaggaaagcttgccttttcagtttgcacaccacctactgaatccctgg
aatgacaacaagaaagtacagataagcagagatggacaggagctggagccacaagctgga
gaacagttgctgcagctgtgggagcggattcccttgggagaaaaaacacaacagacagac
ctcaaacatgccatgctggtgaacgtatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (23)   
   Pfam (23)   
All databases (82)   

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