KEGG   Latimeria chalumnae (coelacanth): 102360902
Entry
102360902         CDS       T02913                                 
Name
(RefSeq) tRNA pseudouridine synthase A, mitochondrial-like
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
lcm  Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:lcm03016]
    102360902
Enzymes [BR:lcm01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     102360902
Transfer RNA biogenesis [BR:lcm03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    102360902
 Prokaryotic type
    102360902
SSDB
Motif
Pfam: PseudoU_synth_1 DUF2344
Other DBs
NCBI-GeneID: 102360902
NCBI-ProteinID: XP_014342671
Position
Un
AA seq 415 aa
MFSLKFFPRPYRSWFRGVLMPAVASPSNHRATCRSAQKFHVVSSCSGLVTEEDSNTDNDG
VPGEEGPEESISVDLTDAFKLSSRKPKRKFALLLAYNGNGYYGMQRNPGVRDLHTIEDDL
VLALVKAGCIPEAFADDMKELSFQRCARTDKGVSAAGQLVSLKLHLTEDLVDVLNQNLPP
QIRVLGCKRVTRGFSSKSNCDARTYSYMLPTFTFATQDGERQDGHFCLHRDTFHRVNHLL
SCYRGTHNFHNFTSGRSAADPSAVRYVMSACCGEPFFYGGLEYAIIEIKGQSFMRHQIRK
MVALAVAVAKGWAPEPILAESLSSEKVHLPRVPGLGLVLERVHFDRHNARYGQNGIHQRI
SWEEVEPLMMEFKERQIYPSVVRVELEEKSMAKWLEKLARHSYGSSFSTGKAEQD
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgttctctttgaagttctttccaagaccgtatcgctcctggttccggggtgtactgatg
ccagctgttgcaagcccgtcaaatcaccgagcaacatgccgtagtgcacagaaattccat
gtagtatcctcttgcagtggtctggtcacagaagaagacagtaatacggacaatgatggt
gtcccgggagaggagggtcctgaagaatccatttcagtcgatcttaccgacgcattcaaa
ctcagcagcaggaaaccaaagcggaagtttgctctgctgttggcctacaatggaaatggt
tactacggaatgcagagaaatccgggcgttcgggaccttcacacaatagaagatgactta
gtcttggcactggtgaaagctggctgtatcccagaggcctttgccgatgacatgaaggaa
ttatctttccagaggtgtgctcgcacagataagggtgtttctgctgctgggcagctggtt
tcattaaaactacatctgacagaagacttggtggatgtcctaaaccaaaacctcccccct
caaatccgtgtcttaggctgtaagagagtaactcgtgggtttagctctaaaagtaactgc
gatgcccgaacgtactcctacatgcttccaacgttcactttcgccacacaggatggggag
cgccaagacggacacttctgtttgcaccgtgatacctttcaccgagtcaatcacctcctc
tcctgctacagggggactcacaattttcataactttacatccggaagatctgcggctgac
ccgagtgccgtgcgctacgtcatgagtgcgtgctgtggtgaacctttcttctacggcgga
ctggagtatgccatcattgagatcaaaggtcagagcttcatgcgtcaccagatccgaaag
atggttgcgctggccgtggcagtcgctaaggggtgggcgccggagccgatcttggcggag
tcgctgagttccgagaaggtgcacctcccgagggtgccgggactgggcttggttttggag
agagttcacttcgaccgccacaatgctcgctatgggcaaaacgggatccaccagcgaatc
agctgggaggaggtggaacccctgatgatggaatttaaggagaggcagatttatccatct
gttgtccgggtggagctggaggagaagtccatggcaaagtggctggagaaactggcaaga
cacagctatggatcgtctttcagtacgggaaaagcagagcaggactga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (27)   

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